Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq218279 183 6e-44 seq165536 178 3e-42 >seq218279 Length=1762 Score = 183 bits (202), Expect = 6e-44 Identities = 212/285 (74%), Gaps = 7/285 (2%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCAC---- 56 |||||||||||| ||||||||| ||||| || ||| ||| || ||| | Sbjct 1651 GGCTGCTGGCACATAGTTAGCCGGTGCTTCTTGTCAAGATACCGTCATCCTCACTATTTA 1592 Query 57 --ACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCT 114 | | | | | ||| ||| ||| ||||| ||||||| ||| || ||||| || Sbjct 1591 TTAGATAGTAAGATTTCTTCTCTTGCGAAAGAGCTTTACAACCCGAAGG-CCTTCTTCAC 1533 Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174 |||||| ||||||| |||| | || |||||| |||| ||||| |||||||||||| Sbjct 1532 TCACGCGGAATGGCTGGATCAGGGTTTCCCCCATTGTCCAAAATTCCCCACTGCTGCCTC 1473 Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCT 234 |||||||||| |||||||||||||||||||| ||||| || | |||||||||| | || Sbjct 1472 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCGTCCTCTCAGACCAGCT 1413 Query 235 ATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | ||||| |||| ||| |||| ||||||| || |||||||||| Sbjct 1412 ACTGATCGTCGGCTTGGTAGGCCTTTACCCCACCAACTACCTAAT 1368 >seq165536 Length=484117 Score = 178 bits (196), Expect = 3e-42 Identities = 226/313 (72%), Gaps = 20/313 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| |||| ||| | ||| |||| Sbjct 146694 GGCTGCTGGCACGGAGTTAGCCGGGGCTTTTTCTGCAAGTA---------------ACGT 146738 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | |||| | ||||||| ||||||| || || |||||||| |||| | Sbjct 146739 CA----TTATCTTCCTTGCTAAAAGAGCTTTACAACCCTAAGG-CCTTCATCACTCACTC 146793 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||| |||| || ||| |||||| |||||||||| |||||||||||||||||| Sbjct 146794 GGTATTGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 146853 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| || Sbjct 146854 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACAGAT 146913 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| |||| |||| ||||||||| | || || ||||||| |||| | |||| || Sbjct 146914 CGTCGGCTTGGTGAGCCGTTACCTCACCAACGACCTAATCTGACGCGGGCTCATCCATCA 146973 Query 301 CCGATGAATCTTT 313 |||| ||||||| Sbjct 146974 GCGATAAATCTTT 146986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1064850869504