Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18]
369,492 sequences; 1,765,382,190 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq218279 183 6e-44
seq165536 178 3e-42
>seq218279
Length=1762
Score = 183 bits (202), Expect = 6e-44
Identities = 212/285 (74%), Gaps = 7/285 (2%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCAC---- 56
|||||||||||| ||||||||| ||||| || ||| ||| || ||| |
Sbjct 1651 GGCTGCTGGCACATAGTTAGCCGGTGCTTCTTGTCAAGATACCGTCATCCTCACTATTTA 1592
Query 57 --ACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCT 114
| | | | | ||| ||| ||| ||||| ||||||| ||| || ||||| ||
Sbjct 1591 TTAGATAGTAAGATTTCTTCTCTTGCGAAAGAGCTTTACAACCCGAAGG-CCTTCTTCAC 1533
Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174
|||||| ||||||| |||| | || |||||| |||| ||||| ||||||||||||
Sbjct 1532 TCACGCGGAATGGCTGGATCAGGGTTTCCCCCATTGTCCAAAATTCCCCACTGCTGCCTC 1473
Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCT 234
|||||||||| |||||||||||||||||||| ||||| || | |||||||||| | ||
Sbjct 1472 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCGTCCTCTCAGACCAGCT 1413
Query 235 ATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| ||||| |||| ||| |||| ||||||| || ||||||||||
Sbjct 1412 ACTGATCGTCGGCTTGGTAGGCCTTTACCCCACCAACTACCTAAT 1368
>seq165536
Length=484117
Score = 178 bits (196), Expect = 3e-42
Identities = 226/313 (72%), Gaps = 20/313 (6%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
||||||||||||||||||||||| |||| ||| | ||| ||||
Sbjct 146694 GGCTGCTGGCACGGAGTTAGCCGGGGCTTTTTCTGCAAGTA---------------ACGT 146738
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
|| | |||| | ||||||| ||||||| || || |||||||| |||| |
Sbjct 146739 CA----TTATCTTCCTTGCTAAAAGAGCTTTACAACCCTAAGG-CCTTCATCACTCACTC 146793
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| ||||| |||| || ||| |||||| |||||||||| ||||||||||||||||||
Sbjct 146794 GGTATTGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 146853
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| ||
Sbjct 146854 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACAGAT 146913
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300
||| |||| |||| ||||||||| | || || ||||||| |||| | |||| ||
Sbjct 146914 CGTCGGCTTGGTGAGCCGTTACCTCACCAACGACCTAATCTGACGCGGGCTCATCCATCA 146973
Query 301 CCGATGAATCTTT 313
|||| |||||||
Sbjct 146974 GCGATAAATCTTT 146986
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1064850869504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |