Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq277972 77.0 5e-12 seq180387 77.0 5e-12 seq160358 77.0 5e-12 seq144063 77.0 5e-12 seq306416 73.4 6e-11 seq72456 73.4 6e-11 >seq277972 Length=8070 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || | |||||| || | || || |||| Sbjct 2181 GTACGAGAGGAACCGCAGG-TTCGGAC-ACTTGGTTCATGTGCTTGGTCGAGAGACCAGT 2124 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| | |||||| | |||||||||||||||||||||||| Sbjct 2123 GGTGCGAAGCTACCATCCGTGGGATTACGACTGAACGCCTCTAAGTCAGAATCC 2070 >seq180387 Length=1039 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || | |||||| || | || || |||| Sbjct 301 GTACGAGAGGAACCGCAGG-TTCGGAC-ACTTGGTTCATGTGCTTGGTCGAGAGACCAGT 358 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| | |||||| | |||||||||||||||||||||||| Sbjct 359 GGTGCGAAGCTACCATCCGTGGGATTACGACTGAACGCCTCTAAGTCAGAATCC 412 >seq160358 Length=1122 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || | |||||| || | || || |||| Sbjct 1057 GTACGAGAGGAACCGCAGG-TTCGGAC-ACTTGGTTCATGTGCTTGGTCGAGAGACCAGT 1000 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| | |||||| | |||||||||||||||||||||||| Sbjct 999 GGTGCGAAGCTACCATCCGTGGGATTACGACTGAACGCCTCTAAGTCAGAATCC 946 >seq144063 Length=1063 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || | |||||| || | || || |||| Sbjct 338 GTACGAGAGGAACCGCAGG-TTCGGAC-ACTTGGTTCATGTGCTTGGTCGAGAGACCAGT 281 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| | |||||| | |||||||||||||||||||||||| Sbjct 280 GGTGCGAAGCTACCATCCGTGGGATTACGACTGAACGCCTCTAAGTCAGAATCC 227 >seq306416 Length=54843 Score = 73.4 bits (80), Expect = 6e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||| |||||||||||||| | |||||| | |||||||||||||||||||||||| Sbjct 29229 CAGTGGTGCGAAGCTACCATCCGTGGGATTACGACTGAACGCCTCTAAGTCAGAATCC 29286 >seq72456 Length=526646 Score = 73.4 bits (80), Expect = 6e-11 Identities = 86/114 (75%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || | |||||| || | || || |||| Sbjct 146404 GTACGAGAGGAACCGCAGG-TTCGGAC-ACTTGGTTCATGTGCTTGGTCGAGAGACCAGT 146347 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| | |||||| | |||||||||||||| ||||||||| Sbjct 146346 GGTGCGAAGCTACCATCCGTGGGATTACGACTGAACGCCTCTAATTCAGAATCC 146293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 816267711488