Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18]
369,492 sequences; 1,765,382,190 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq277972 77.0 5e-12
seq180387 77.0 5e-12
seq160358 77.0 5e-12
seq144063 77.0 5e-12
seq306416 73.4 6e-11
seq72456 73.4 6e-11
>seq277972
Length=8070
Score = 77.0 bits (84), Expect = 5e-12
Identities = 87/114 (76%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | ||| || | |||||| || | || || ||||
Sbjct 2181 GTACGAGAGGAACCGCAGG-TTCGGAC-ACTTGGTTCATGTGCTTGGTCGAGAGACCAGT 2124
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||| | |||||| | ||||||||||||||||||||||||
Sbjct 2123 GGTGCGAAGCTACCATCCGTGGGATTACGACTGAACGCCTCTAAGTCAGAATCC 2070
>seq180387
Length=1039
Score = 77.0 bits (84), Expect = 5e-12
Identities = 87/114 (76%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | ||| || | |||||| || | || || ||||
Sbjct 301 GTACGAGAGGAACCGCAGG-TTCGGAC-ACTTGGTTCATGTGCTTGGTCGAGAGACCAGT 358
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||| | |||||| | ||||||||||||||||||||||||
Sbjct 359 GGTGCGAAGCTACCATCCGTGGGATTACGACTGAACGCCTCTAAGTCAGAATCC 412
>seq160358
Length=1122
Score = 77.0 bits (84), Expect = 5e-12
Identities = 87/114 (76%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | ||| || | |||||| || | || || ||||
Sbjct 1057 GTACGAGAGGAACCGCAGG-TTCGGAC-ACTTGGTTCATGTGCTTGGTCGAGAGACCAGT 1000
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||| | |||||| | ||||||||||||||||||||||||
Sbjct 999 GGTGCGAAGCTACCATCCGTGGGATTACGACTGAACGCCTCTAAGTCAGAATCC 946
>seq144063
Length=1063
Score = 77.0 bits (84), Expect = 5e-12
Identities = 87/114 (76%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | ||| || | |||||| || | || || ||||
Sbjct 338 GTACGAGAGGAACCGCAGG-TTCGGAC-ACTTGGTTCATGTGCTTGGTCGAGAGACCAGT 281
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||| | |||||| | ||||||||||||||||||||||||
Sbjct 280 GGTGCGAAGCTACCATCCGTGGGATTACGACTGAACGCCTCTAAGTCAGAATCC 227
>seq306416
Length=54843
Score = 73.4 bits (80), Expect = 6e-11
Identities = 51/58 (88%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 57 CAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
||||| |||||||||||||| | |||||| | ||||||||||||||||||||||||
Sbjct 29229 CAGTGGTGCGAAGCTACCATCCGTGGGATTACGACTGAACGCCTCTAAGTCAGAATCC 29286
>seq72456
Length=526646
Score = 73.4 bits (80), Expect = 6e-11
Identities = 86/114 (75%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | ||| || | |||||| || | || || ||||
Sbjct 146404 GTACGAGAGGAACCGCAGG-TTCGGAC-ACTTGGTTCATGTGCTTGGTCGAGAGACCAGT 146347
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||| | |||||| | |||||||||||||| |||||||||
Sbjct 146346 GGTGCGAAGCTACCATCCGTGGGATTACGACTGAACGCCTCTAATTCAGAATCC 146293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 816267711488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |