Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq14242 392 1e-106 seq95709 298 2e-78 seq35874 275 2e-71 seq225622 260 4e-67 seq276186 241 4e-61 seq361322 150 5e-34 seq25831 122 3e-25 seq58945 109 2e-21 seq356670 100 9e-19 seq279561 80.6 8e-13 >seq14242 Length=8668 Score = 392 bits (434), Expect = 1e-106 Identities = 398/510 (78%), Gaps = 15/510 (3%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||| || || ||||||| | | ||| ||||| | ||||||||||| Sbjct 2739 TCATTCCAATTATAAAACATCATAAAAGAGTCTTATATTGTTATTTCTCGTCACTACCTC 2680 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 2679 CCCGTGCCGGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCATTT 2620 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 2619 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATGGTAG 2560 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||| |||||||| | ||||||||||||||| ||||||| || | ||||||| | Sbjct 2559 TCCTCTATACTACCATCAATAGTTGATAGGGCAGATATTTGAAAGATCTGTCGCCGGTGC 2500 Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAAT--CACCAAGGAGCCCCGAAGGGCG-TTG 298 || ||||||||| || |||| || | || | | | | || ||| || ||| Sbjct 2499 GAGACCATGCGATCAACAAAATTATCCAGATTTCAACTCAAGCGTCACGGAGGACGATTG 2440 Query 299 GTTTTTTATCTAATAAATACACCCCTTC--CGAAGTCGGGGTTTTTAGCATGTATTAGCT 356 | ||| ||||||| | ||| ||| ||| ||| | ||| ||||||||||||| Sbjct 2439 G---TTTGACTAATAATTGCACAGGTTCCGCGAGGTCCCTGCATTTTGCATGTATTAGCT 2383 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGATAACTGATT 414 ||||| || |||| |||||||| ||| |||| | ||| |||| ||| ||| | Sbjct 2382 CTAGATTTTCCACAGTTATCCAAGTAACTAGGTAAATGATCTTGTAAATTATAGCTGTTA 2323 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAA 474 || |||||| | || ||||||| || | | || || |||||||||||||||||||||| Sbjct 2322 TACTGAGCCTTATGCGGTTTCACATTA-AAACTGTTTGTACTTAGACATGCATGGCTTAA 2264 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||| ||| | |||||| || Sbjct 2263 CCTTTGAGACAAGCGTAT-ATTACTGGTAG 2235 >seq95709 Length=1008 Score = 298 bits (330), Expect = 2e-78 Identities = 220/255 (86%), Gaps = 1/255 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||| ||||||| | || |||||||| || |||| ||||| | |||||||| Sbjct 326 GTACTCATTTCAATTACGGGGCCTCAAAAGAGTCCCGTATTGTTATTTTTCGTCACTACT 267 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 266 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 207 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| Sbjct 206 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCTCCGTTACCCGTAACAACCATGGT 147 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| || ||||||||||| |||||||| |||||| | ||||| ||| | |||||||| Sbjct 146 AGGCGCATAACCTACCATCGACAGTTGATAAGGCAGACACTTGAAAGAAACGTCGCCGGC 87 Query 240 TCAAGGCCATGCGAT 254 || |||| |||||| Sbjct 86 TCGTGGCCGTGCGAT 72 >seq35874 Length=45075 Score = 275 bits (304), Expect = 2e-71 Identities = 380/519 (73%), Gaps = 36/519 (7%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATT-GTCACTACCT 60 |||||||| ||||||| | | |||||||| || || | ||||| || |||||| ||| Sbjct 29599 TACTCATTTCAATTACGGG-CTCAAAAGAGTCCCGTTTTGTTATTTTTTTGTCACTTCCT 29657 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 | | ||| |||||| |||||||||| |||||||||||| |||| |||||||| ||||||| Sbjct 29658 CTC-GTGCCGGGAT-GGGTAATTTGTGCGCCTGCTGCCGTCCTCGGATGTGGCAGCCGTT 29715 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||| |||| |||| ||||||||||| ||| |||| ||||||| | | ||||| ||| Sbjct 29716 TCTTGGGCTTCCTCACCGGAATCGAAACCTGATTCTCCGTTACTCCTAACAACCATAGTA 29775 Query 181 GGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||| || || || ||||||| |||| ||| |||||| | ||||| ||| | |||||||| Sbjct 29776 GGCGCATTA-ACTGCCATCGACAGTTAATAAGGCAGACACTTGAAAGAAACGTCGCCGGC 29834 Query 240 TCAAGGCCATGCGAT--TCGTTAAGTTATTATGA---ATCAC-CAAGGAGCCCCGAAGGG 293 || |||| ||||| | ||||||| || ||||| ||| | |||| | Sbjct 29835 TCGTGGCCGGGCGATCAGCACAAAGTTATCCAGAGTCATCACACAAACTGGACCGATGCC 29894 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTT----TTTA--GCAT 347 || | | | || ||||||||| ||||| | | || ||| || | | || | Sbjct 29895 CGATTGATATTGGTCTAATAAA-GCACCCGTCGCCCCGTGGGGCTTCGGCCTCACTGCGT 29953 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 |||| ||||||||| || || |||| || || | | || ||| || Sbjct 29954 GTATCAGCTCTAGA------------ATACAAGTAGGAAAAAACGACCTAAGGAACCATG 30001 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCAC--TGTATAGATTGCTTATACTTAGACATGC 465 ||||||| |||||||||||||| ||||| | ||| | | || | || |||||||||| Sbjct 30002 ACTGATTCAATGAGCCATTCGCGGTTTCGCCTTGTTTCG---GCATGTAGTTAGACATGC 30058 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| ||||||||||||| Sbjct 30059 ATGGCTTAATCTTTGAGACAAGCATGTGACTACTGGCAG 30097 >seq225622 Length=29069 Score = 260 bits (288), Expect = 4e-67 Identities = 350/485 (72%), Gaps = 38/485 (8%) Strand=Plus/Plus Query 43 TATTTATTGTCACTAC-CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTC 101 ||||| | ||| |||| |||| |||| ||||| |||||||| |||| ||||||||||||| Sbjct 16624 TATTTTTCGTCTCTACTCTCCACGTGCCGGGAGTGGGTAATATGCGAGCCTGCTGCCTTC 16683 Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 || ||||||||||||||||||| || ||||||||||| |||| | ||| Sbjct 16684 CTAGGATGTGGTAGCCGTTTCTT------------CGTAATCGAACCCTGATTCTCTGTT 16731 Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221 ||||| |||||||||||| || |||||||| | ||| || | |||||| | || Sbjct 16732 ACCCGCAACAACCATGGTAGGCGCATAACCTACCATTGGCAGTCGACAAGGCAGACACTT 16791 Query 222 GAATGAACCATCGCCGGCTCAAGGCCATGCGATT--CGTTAAGTTATTATGAATCACCAA 279 ||| || | |||||||||| | |||||||||| | ||| |||| || |||||| Sbjct 16792 GAAGAAAACGTCGCCGGCTCGTGACCATGCGATTAGCACTAACTTATCCAGAGTCACCAC 16851 Query 280 GGA----GCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCC--CTTCCGAAGTC 333 || | |||||| || | | | || ||||||||| ||| | | || ||| Sbjct 16852 AGAAAACGGACCGAAGCCCGATCGATCTTGCTCTAATAAACGCACTCGTCGCCCCGAGTG 16911 Query 334 G----GGGTTTTTAGCATGTATTAGC--------TCTAGAATTACCACGGTTATCCATGT 381 | ||| | ||||||| |||| ||||| ||| ||| | |||||| || Sbjct 16912 GCATCGGGCTGACTGCATGTACTAGCTCTAGTATTCTAGTATTGTCACAGATATCCAAGT 16971 Query 382 AGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA 441 || ||| || ||| || ||| ||||||||||| | |||||||||| ||||| || Sbjct 16972 AGGAAGAAACGATCTAAGGAACCTTAACTGATTTATTAAGCCATTCGCGGTTTC---GTC 17028 Query 442 TAGATT--GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499 | | || || | ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 17029 TTGTTTCGGCACGTGCTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGGCTACT 17088 Query 500 GGCAG 504 ||||| Sbjct 17089 GGCAG 17093 >seq276186 Length=1047 Score = 241 bits (266), Expect = 4e-61 Identities = 261/341 (77%), Gaps = 19/341 (6%) Strand=Plus/Minus Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 ||||| || ||||||||||| |||||||| |||||| | ||||| ||| | ||||||| Sbjct 1047 TAGGCGCATAACCTACCATCGACAGTTGATAAGGCAGACACTTGAAAGAAACGTCGCCGG 988 Query 239 CTCAAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAAGGA----GCCCCGAAGG 292 ||| |||| |||||| | ||||||| || |||||| | | |||||| Sbjct 987 CTCGTGGCCGTGCGATCAGCACAAAGTTATCCAGAGTCACCACACAAAACGGACCGAAGC 928 Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTT---CCGAAG----TCGGGGTTTTTAGC 345 || | | | || ||||||||| ||||| | |||| | ||||| | | || Sbjct 927 CCGATTGATCTTGGTCTAATAAAAGCACCCGTCGCCCCGAGGGGCTTCGGGCTCACT-GC 869 Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGA 405 ||||||||||||||||||| |||| |||||||| |||| ||| || ||| || ||| | Sbjct 868 ATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGGAAGAAACGATCTAAGGAACCA 809 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCAC--TGTATAGATTGCTTATACTTAGACAT 463 |||||||||||||||||||||||| ||||| | ||| | | || | ||||||||||| Sbjct 808 TAACTGATTTAATGAGCCATTCGCGGTTTCGCCTTGTTTCG---GCATGTACTTAGACAT 752 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||| Sbjct 751 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 711 >seq361322 Length=1106 Score = 150 bits (166), Expect = 5e-34 Identities = 116/136 (85%), Gaps = 5/136 (4%) Strand=Plus/Plus Query 371 GTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 |||||||| |||| ||| || ||| || ||| ||||||||||||||||||||||||| Sbjct 378 GTTATCCAAGTAGGAAGAAACAATCTAAGGAACCATAACTGATTTAATGAGCCATTCGCG 437 Query 431 GTTTCAC--TGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 ||||| | ||| | | || | |||||||||||||||||||||||||||||||||||| Sbjct 438 GTTTCGCCTTGTTTTG---GCATGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 494 Query 489 ATATGACTACTGGCAG 504 |||||||||||||||| Sbjct 495 ATATGACTACTGGCAG 510 >seq25831 Length=1045 Score = 122 bits (134), Expect = 3e-25 Identities = 104/127 (82%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 371 GTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCA 430 |||||||| |||| ||| || || || ||| |||||||||||||||||| ||||| Sbjct 920 GTTATCCAAGTAGGAAGAAACAGTCTAAGGAACCATAACTGATTTAATGAGCAATTCGAG 979 Query 431 GTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCAT 490 ||||| || | | | || | ||||||| |||||||||||||||||||||||||||||| Sbjct 980 GTTTCGCTTTGTTT-TGGCATGTACTTAGTCATGCATGGCTTAATCTTTGAGACAAGCAT 1038 Query 491 ATGACTA 497 ||||||| Sbjct 1039 ATGACTA 1045 >seq58945 Length=365055 Score = 109 bits (120), Expect = 2e-21 Identities = 146/198 (74%), Gaps = 20/198 (10%) Strand=Plus/Minus Query 70 GGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCT 129 |||| | |||||||||||||||||||||||||||| || |||| ||||||||||||||| Sbjct 266620 GGGAGTTGGTAATTTGCGCGCCTGCTGCCTTCCTTAAATATGGT-GCCGTTTCTCAGGCT 266562 Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC-CA--- 185 |||||| ||| |||||||||| | ||||||||| | ||||||| || || Sbjct 266561 CCCTCTTCGGGATCGAACCCT------CTGTTACCCGTAACAAGCATGGTACGCGCATAA 266508 Query 186 -----CTATCC--TACCATCGA-AAGTTGATAGGGCAGA-AATTTGAATGAACCATCGCC 236 | ||| |||||| || |||||||| ||| || | | || ||| ||||| Sbjct 266507 CTTATATGTCCTATACCATTGATTAGTTGATAAGGCGGACACTCCAAAAGAAACATCGGG 266448 Query 237 GGCTCAAGGCCATGCGAT 254 | ||| |||| |||||| Sbjct 266447 GTCTCGTGGCCGTGCGAT 266430 >seq356670 Length=1754 Score = 100 bits (110), Expect = 9e-19 Identities = 91/113 (81%), Gaps = 5/113 (4%) Strand=Plus/Plus Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415 ||||||||| |||| |||||||| |||| ||| || ||| || ||| ||||||||||| Sbjct 1645 TCTAGAATTGCCACAGTTATCCAAGTAGGAAGAAACGATCTAAGGAACCATAACTGATTT 1704 Query 416 AATGAGCCATTCGCAGTTTCAC--TGTATAGATTGCTTATACTTAGACATGCA 466 |||||||||||||| ||||| | ||| | | || | |||||||||||||| Sbjct 1705 AATGAGCCATTCGCGGTTTCGCCTTGTTTCG---GCATGTACTTAGACATGCA 1754 >seq279561 Length=85255 Score = 80.6 bits (88), Expect = 8e-13 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| |||||||| ||||||||||| ||| Sbjct 5022 TACTTAGACATGCATGGCTTAATCTTTCAGACAAGCGTATGACTACTGCCAG 4971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1504819192832