Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq16628 168 5e-37 seq128081 134 1e-26 seq297272 123 2e-23 >seq16628 Length=231947 Score = 168 bits (186), Expect = 5e-37 Identities = 740/1161 (64%), Gaps = 40/1161 (3%) Strand=Plus/Plus Query 65807 AAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGT 65866 |||| |||||||| |||||| ||||| || || || || ||||| |||| || ||| || Sbjct 199338 AAAGCGTCGGCCAAACCTTGGACTCCGATTCCAATAGGGCGATGCCGCATGTTTGAAAGT 199397 Query 65867 CTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACC 65926 |||| || || | || || ||||| | |||||| || |||||| || | || || Sbjct 199398 TTCGCTTCGGGAATTGGATAATAATTAACATCGATTATTTTATTCAAGTTTCTAGTTACG 199457 Query 65927 ACATGCACGATACGT--CGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGC 65984 || | | ||| | ||||||| ||| ||||| || ||| | || | || | | Sbjct 199458 ACT--CTAGTTACTTGACGCAATTTTTCAAAATCGAAGTGTCCATGATAAACG--AATC- 199512 Query 65985 CGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAG 66044 || | ||| |||| || || | || || || || | ||||||| Sbjct 199513 --GATTC---AAA----------GCAATCGACGCTAAATTACACACGGCAACCTCGTCAA 199557 Query 66045 GAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCT 66104 | || ||||| || |||||||| || |||||||| || ||| || || | || | Sbjct 199558 CGGACGTGTACTCTACGATTTCGGTACATAGATTACTACATTTTATTGTACCGACGTTTT 199617 Query 66105 GTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAA 66164 |||||| || | |||||| || || ||||| | ||| || || || || || || Sbjct 199618 TTTGATTCGATTTTCTATTGCAGGCGTCTTTGTATAACATATATGGCGTACCAGTTTCCG 199677 Query 66165 CTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCT-- 66222 ||| || || || || || ||| || |||| || || | |||| Sbjct 199678 TTTGTGATTCGATAATTGCACTCCAGAGTTGTTGTGCA-----CGAACTTGACGCCGATA 199732 Query 66223 ACCTTTG--CGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGA 66279 || ||| ||| ||||| | |||| || | ||||||| ||| || |||| || Sbjct 199733 ACGTTTCTCCGTCTCGTATCGAACGTAAAGTTTTTCGAAGTCTTCGCCGTATACATCTTG 199792 Query 66280 CAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACG 66339 ||| |||| | |||||||||||||| |||||| ||||| | ||| || | Sbjct 199793 CAGGTGAGGACTTTCGTGTGGACACATCAACGACCATATTCCATCTTCTTCCACCCTTTT 199852 Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| |||| ||| || ||||| | |||| || ||||| ||||| | ||| || | Sbjct 199853 CATGAATAAATCGGGAATCCACAAACCGTAAAAAAGATCACGTGCCCTACTCTCTTCTTT 199912 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||| |||||| | || | || || || | || || ||||| |||||||| || Sbjct 199913 ACCGGTATTTTTTTTTAGATCCAAAAAATCGAACACATCTGCGTGCCACGGTTCCAGATA 199972 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 |||||||| || ||| | |||| |||||| || |||||||| || || ||||| Sbjct 199973 GATGGCGATCGCTCCCGGTCTTTTGTTGCCACCCTGATCGACGTAACGTGCCGTGTTGTT 200032 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGA 66579 | || || | ||| ||||| | ||||| ||| | ||||| || || | ||| Sbjct 200033 ATACACTCGTAGCATGGGTACAATACCGTTCGATGTACCATTTGTTCCTGCTATGTAACT 200092 Query 66580 TCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGC 66639 ||| || || || | ||| | || | || || ||||| |||| || || ||| Sbjct 200093 TCCAGAAGCACGAATGTTGTGTATGTTAATTCCTATTCCACCAGCCGATTTTGAAATGAG 200152 Query 66640 AGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAG 66699 ||||| | || ||| | |||| || || ||| || | || || || | Sbjct 200153 TGCACACTGTTTCAGTGTATCGTATATTCCTTCTATGCTATCGTCTTTCATTTGCAATAA 200212 Query 66700 GTAGCA--TGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCG 66757 | || | || ||||| ||||| || || | || ||| || ||||| | || Sbjct 200213 AAAACAACTCGAC--AGTTGCGGTTTAGGAGTCCCAGCGTTGAAAAGTGTGGGAGATGCT 200270 Query 66758 TGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCG 66817 |||||||| | | ||||||| |||||||| || || || || | || Sbjct 200271 TGCGTAAACCATTTTTCAGACATGAGGTTGTACGTTTCAATCGCACTGCTAAGATCGTCC 200330 Query 66818 CCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCC 66877 || ||||| || | | | ||||| || | || ||| ||||| || || | | ||| Sbjct 200331 CCGTGAATGCCAATCGAAACGCGCATAAGCATGTGTTGTGGCCGCTCTACAA--CTTTCC 200388 Query 66878 --TTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGA 66935 || || | | ||| | | ||||||| ||||| | |||||||| ||||||| Sbjct 200389 CATTAATCTTGAGTAAATGCGCACGTTCCAATGTCTTAAATCCAAAGTAGTTATAATTGA 200448 Query 66936 AATCGTTAGCATGCACGATGG 66956 ||||| | | | ||||||| Sbjct 200449 AATCGCGATCGTAAACGATGG 200469 >seq128081 Length=1306280 Score = 134 bits (148), Expect = 1e-26 Identities = 163/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 66254 TCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGAC 66313 || ||| ||| || | || ||| ||| | || |||| || |||||||| || ||| Sbjct 763422 TCAAAGTCTTCTCCGTAGACCTCGTGCAGGCCAGGGCACTCATGGGGACACATGAGGGAC 763363 Query 66314 CA-ATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 || ||| ||||||||| || || ||||| || || || || ||||||||||||||||| Sbjct 763362 CACATCTG-ATCCTGTTCCACCCGCCGCATGAACAGGTCTGGGATCCAGAGGGCGTAGAA 763304 Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATG-CCGTGATTTTTGCGCAAGTCGAGGAACTCAA 66431 |||||| ||||| || | |||||| || ||||| || || || ||| ||||| |||| Sbjct 763303 GAGATCCCGTGCCCGGTTCTCCTCCTTGCCCGTG-TTCTTTTTCAGGTCCAGGAAGTCAA 763245 Query 66432 AGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAA 66468 | | ||| || |||||||| |||||||| || || || Sbjct 763244 ACACGTCCGCGTGCCATGGCTCCAGGTACATCGCAAA 763208 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 67061 GTCTGCTTGTGCATGTTGGAGATGGCGATACGGGCGGCCAGGACACCATAATCGGGATGT 67120 |||| |||||| | |||||||||||| || || || ||||| | |||| ||||| ||| Sbjct 752940 GTCTCCTTGTGGAGGTTGGAGATGGCAATGCGCGCTGCCAGAATGGCATAGTCGGGGTGT 752881 Query 67121 AGAGTCATCATACTGGCGGCAGTTTCAGCGGCCAAGGTATCAAGTTCAGCGGTAGTCACA 67180 ||| |||| | || ||||||||||| |||||| | || |||||| |||| ||||| Sbjct 752880 TTCGTCGTCATTGTCGCAGCAGTTTCAGCTGCCAAGTTGTCCAGTTCAACGGTGGTCACG 752821 Query 67181 CCAGGATACAGGCCA 67195 || || || |||||| Sbjct 752820 CCGGGGTAGAGGCCA 752806 Score = 104 bits (114), Expect = 2e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 66033 CTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGG 66092 ||| |||||| || ||||| ||||| | | ||||||||||| || ||||| |||| Sbjct 764269 CTACCTCGTCTGGCGCGGTGTACTCAATGACCTCGGTGCACAGGTTGCTGCACTTGATGG 764210 Query 66093 TGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAG 66152 |||| | |||| || || ||||| ||||| || || ||||||| |||||| || | Sbjct 764209 TGCCGAGGTTCTTCTGGTTGGACTTGCTGTTGCAGGCGTCTTTGTACAGCATGTAAGGGG 764150 Query 66153 TGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192 |||| ||||| | || ||||| | |||||||| ||| || Sbjct 764149 TGCCCGTCTCTATCTGCGACTCCAGGATGGCGTACCACAG 764110 >seq297272 Length=244611 Score = 123 bits (136), Expect = 2e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| |||||| |||||||| || ||| |||||||||| || |||||||||||||| | Sbjct 162376 TGGAGCGTTTCAGTCAGGAGGTCCAGGTGACGGAGGCGCGCTGCTTCTACGGCTTCCAAA 162435 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | || || |||||||| ||||| ||||||||||| | |||||||| || ||||||| || Sbjct 162436 TGGCTATCGAGAATGTGCACTCCGAGATGTACAGCCTCCTCATCGACACTTACATCAAGG 162495 Query 61376 A 61376 | Sbjct 162496 A 162496 Score = 113 bits (124), Expect = 4e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 ||||| ||| | |||||||| || | ||| |||| ||||| ||||| | || ||| Sbjct 163354 TTCAACGCCGTTGAGACGATGCCCTGCATTAAGAGGAAGGCGGACTGGGCACTAAACTGG 163413 Query 61459 ATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGT 61518 |||| || | || |||||||| || || | | || ||||| | |||||||| Sbjct 163414 ATCAGCAACCGCAGCGCCACATTTGGCGAGCGCATCGTCGCGTTTGCAGCCGTCGAGGGC 163473 Query 61519 GTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCC 61578 | || ||| |||||||| || | ||||| ||| ||||||| || ||||| |||||| Sbjct 163474 ATCTTCTTCTCGGGATCGTTCGCATCCATCTTCTGGCTGAAGAAGCGGGGACTCATGCCC 163533 Query 61579 GGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 || || ||||||||||| ||| | || || ||||||| Sbjct 163534 GGCCTCACCTTCAGCAACGAGCTCATCAGTCGGGACGAGG 163573 Score = 111 bits (122), Expect = 1e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 |||| || || ||| ||||| || || || ||||| |||| || |||| |||||||| Sbjct 160496 ATGAGCCGCTGCTGCGCGAGAACCCCCGGCGCTTCGTCATGTTTCCGATCGTGTATGAGG 160555 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 | || |||||||||||||| ||||| || || ||||||||||| ||||||||||| || Sbjct 160556 ACATCTGGCGCATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGTGGAGGAGGTGGACC 160615 Query 61145 TGTCCAAAGAC 61155 || ||| ||| Sbjct 160616 TGGGCAAGGAC 160626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395777678242880