Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq178724 111 7e-19 seq149517 102 3e-16 seq255993 95.1 5e-14 >seq178724 Length=143562 Score = 111 bits (122), Expect = 7e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 349071 TGGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGC 349130 |||||| || |||||||||| | ||||| |||| | || | |||| ||| ||| |||| Sbjct 93865 TGGCGTTGATGATCTCCTTGATGCGGGGCACGCCCTGCGTGATGTTCATGGACGCCACGC 93806 Query 349131 CGGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGG 349186 | ||||||||||| |||| |||||||| ||||||| ||||||||||||| |||| Sbjct 93805 CCGCAAAGTGGAACGTCTTGAGGGTCATCTGCGTGGCTGGCTCGCCGATGCTCTGG 93750 >seq149517 Length=118462 Score = 102 bits (112), Expect = 3e-16 Identities = 135/181 (75%), Gaps = 10/181 (6%) Strand=Plus/Plus Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC-GGGC-GTCTCGCCGGCCG 449063 |||||||| || ||| | | || ||||||||||||| ||| |||| | | | | || || Sbjct 20359 GTCATGCGGGAGGGGAACCCGTGGGGGTTCATGATGAGGTCTGGGCAGACCCCCTGGTCG 20418 Query 449064 CGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGC 449123 | |||||||||||||||| | | | | | || || || |||||||||||||||| Sbjct 20419 C--TGAAGGGCATGTCCTCCTGCTGGGCAATGAGCCCCACCACCCCCTTCTGGCCGTGGC 20476 Query 449124 GGCTGCAGAACTTGTCCCCCTGCTCGG---GCTTGCGTGTGAAGCGCAGCACGATCTTGA 449180 |||||| |||||||||||| ||||| || | ||| || |||||||| | ||||| Sbjct 20477 GGCTGCTGAACTTGTCCCCGATCTCGGGGCGCCT-CGTCTG--GCGCAGCAGCAGCTTGA 20533 Query 449181 T 449181 | Sbjct 20534 T 20534 >seq255993 Length=445044 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 349082 ATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGG 349141 ||||||||||| | ||||| |||| |||||||||||||||| |||||||| ||||| Sbjct 12553 ATCTCCTTGAGACGGGGCACACCCAACGTCACGTTCTTGGCCGACACGCCGGCGTAGTGG 12612 Query 349142 AAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCT 349201 ||||| | || |||| ||| ||| || || || | ||||| | || ||| || Sbjct 12613 AAGGTGTTCAGCGTCATCTGGGTGGCAGGTTCTCCCAGAGACTGGGCTGCCAGGGCCCCC 12672 Query 349202 ACCATCTCGCCGGGC 349216 |||||||| |||||| Sbjct 12673 ACCATCTCTCCGGGC 12687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2074629085258616