Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_028484.1 Length=11343 Score E Sequences producing significant alignments: (Bits) Value seq283927 93.3 3e-15 >seq283927 Length=152763 Score = 93.3 bits (102), Expect = 3e-15 Identities = 263/392 (67%), Gaps = 13/392 (3%) Strand=Plus/Minus Query 6543 ACAA-GGATTGCAGGAAGATGATTTGGTAATTGGATTAAAGGCAAAAGAGAGAGAGATTA 6601 |||| |||||| | ||||||| | | ||||||||||| | ||| || | || || | Sbjct 1685 ACAACGGATTGGACAGAGATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCA 1626 Query 6602 AGTGGAAAGGACGATTCTTTGCACTCATGAGTTGGCGCCTTCGCGAGTACTTTGTATTTA 6661 || | ||||| ||||||| | || ||| ||| |||| | || || || ||| Sbjct 1625 AGAAGGAAGGAAGATTCTTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTA 1566 Query 6662 CTGAATATTTAATCAAGAAGAATGTG-ATCCCACTATTCAAAGGATTGACCATGGCGGAT 6720 | ||| | || | ||| | | | | || || ||||| |||| | |||||||| || Sbjct 1565 CAGAA-ACCTACTAAAGGA-ATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGAC 1508 Query 6721 GA-TCAAACGACTTTGATCAAGAAGATGATTCAGAACACAAGTGGACAAGG--AGGAAAT 6777 || | | || | | || ||| || | | || || |||||||| |||| Sbjct 1507 GACTTGATGGAAGTCGCAAAA-AAGTTGTTAGACAATTCACCGGGACAAGGGCAGGAC-- 1451 Query 6778 GATTACAAGCATATAACGTTTGCGAATCACATCGATTACGAAAAGTGGAACAATTTCCAA 6837 |||||| | || || |||| || || |||||||||||||| ||||| ||| |||| Sbjct 1450 GATTACCAATTGATTACCATTGCCAACCATATCGATTACGAAAAATGGAATAATCACCAA 1391 Query 6838 AGATATGAATCAACAGCTCCTGTTTTCCGGGTGATTGGACAATTTTTTGGTCTACCGAAC 6897 ||| ||| |||| | || || ||| | ||||| || ||||| || || || || ||| Sbjct 1390 AGAGATG--CTAACAAC-CCGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAAC 1334 Query 6898 TTATTTGTGCGAACGCATGAATTCTTTGAAAA 6929 || || || || || ||||||||||||| Sbjct 1333 TTGTTAACTCGCACCCACAAATTCTTTGAAAA 1302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 36031997542416