Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_032907.1 Length=13109 Score E Sequences producing significant alignments: (Bits) Value seq49187 149 5e-32 seq176488 140 3e-29 seq283927 138 9e-29 seq133769 134 1e-27 seq74890 132 4e-27 >seq49187 Length=20191 Score = 149 bits (164), Expect = 5e-32 Identities = 233/323 (72%), Gaps = 8/323 (2%) Strand=Plus/Plus Query 8189 TAATCGGGCTGAGAGGAAAGGAAAGAGAAATCAAAAGGATAGGTC-GATTCTTCGCTCTT 8247 |||||||||| | || ||||||||||||| | || | | ||| |||||||| | || Sbjct 6356 TAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAA-AGAGGAAAGATTCTTCTCGCTC 6414 Query 8248 ATGTCATGGAAGCTGAGAGATTACTTCGTAATTACAGAATATTTAATTAAATTACATTTC 8307 ||||| ||||| ||||| | |||| ||| | ||||| | ||||| ||| | | | Sbjct 6415 ATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAAT-AAAGGAGTTCTA 6473 Query 8308 -GTCCCTCTCTTCTCCGGATTAACTATGGCAGATGATCTAAACACAGTTGTTaaaaaaa- 8365 || || || ||||| ||||| |||||||| |||||||| | | || || ||| ||| Sbjct 6474 TGTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTA-AGGTGACAAAGAAAC 6532 Query 8366 TGCTCGATACATCTAATGGACAAGGGTTAGACGTT-TACGACTATATCACAATGGCAAAT 8424 | || |||| || | |||||| ||| | || ||| || | |||||||| Sbjct 6533 TCCTAGATAGTTCGATCAACCAAGGGC-AGAATTACTATAACTCCATTTCTCTGGCAAAT 6591 Query 8425 CATATAGATTATGAGAAATGGAATAACCATCAAAGAGGAGAGGCAAACAATCCTGTCTTC 8484 || |||||||||| ||||||||||||||||| | || ||||| || | |||||| ||| Sbjct 6592 CACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTCCTGTGTTC 6651 Query 8485 ACTGTCATGGGTCAGTTTCTAGG 8507 || ||||||||||| ||||| Sbjct 6652 CGAGTAATGGGTCAGTTCCTAGG 6674 >seq176488 Length=2532 Score = 140 bits (154), Expect = 3e-29 Identities = 383/575 (67%), Gaps = 15/575 (3%) Strand=Plus/Minus Query 8137 AAAGAATTCCTAACAGAAGTAAATGACAATGGGCTAGATATGGAGCATCTTG-TAATCGG 8195 ||||| || || ||| | |||||||| || || | ||| | |||| | || || Sbjct 681 AAAGAGTTTCTCGAAGAGATCAATGACAAGGGCCTCCCCAAGGAAGA-CTTGATCATTGG 623 Query 8196 GCTGAGAGGAAAGGAAAGAGAAATCAA-AAGGATAGGTCGATTCTTCGCTCTTATGTCAT 8254 ||| ||| ||||| |||||| | || || || ||| | ||||||| | || ||||| | Sbjct 622 CTTGAAAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGG-CAATTCTTCTCCCTCATGTCTT 564 Query 8255 GGAAGCTGAGAGATTACTTCGTAATTACAGAATATTTAATTAAATTACATTTCGTCCCTC 8314 ||||| | || | ||||| || |||||| || | || ||| | | ||| || | Sbjct 563 GGAAGTTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAAGAATTGTACGTGCCAC 504 Query 8315 TCTTCTCCGGATTAACTATGGCAGATGATCTAAACACAGTTGTTaaaaaaaTGCTCGATA 8374 | ||| |||| | || ||||||||||| || | | ||| || ||| | ||||| | Sbjct 503 TGTTCAACGGACTCACGATGGCAGATGACCTCACAAAGGTTACAAAGAAACTTCTCGACA 444 Query 8375 CATCTAATGGACAAGGGTTAGACGTTTACGACTATATCACAATGGCAAATCATATAGATT 8434 ||| ||||| | | |||| || || |||| || ||| | |||| Sbjct 443 GTTCTTTACATCAAGGACAAACTGATTACTCCTCCATTTGTGTGGCCAACCATGTTGATT 384 Query 8435 ATGAGAAATGGAATAACCATCAAAGAGGAGAGGCAAACAATCCTGTCTTCACTGTCATGG 8494 | |||||||||||||||||||| | || ||| ||||| ||||||||| || |||| Sbjct 383 ACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCTGTCTTCCGAGTGATGG 324 Query 8495 GTCAGTTTCTAGGATATCCAAGCCTCATAACAAGAACACATGAGTTCTTTGAAAAAAGCT 8554 |||||||| | || ||| || | ||||| || |||||||| || || || Sbjct 323 GTCAGTTTGTGGGTCTGCCAGAACTTTTCGTCAGAACGCACGAGTTCTTCGAGAACAGTC 264 Query 8555 TGATCTATTACAACAACAGAAC-AGACCTAATGT-ATGTAAG-AGATGGGGTTGTTTTGA 8611 | ||||||| | || | |||||| || | ||| ||| | | |||| |||| Sbjct 263 TCATCTATT------ATGGACCTAGACCTGATTTAATGGAAGTACAAGGGGACACCTTGA 210 Query 8612 ACA-AAGATGATGACACGCCTGTCTGTTGGAATGGTCAGGCCGGAGGACTAGAGGGGCTG 8670 || | | | | | |||||||||||| | || ||| || || || ||||| || Sbjct 209 TCAGTAAAGCAAGTTA-TCCTGTCTGTTGGGAAGGCCAGAAAGGGGGTCTCGAGGGTTTG 151 Query 8671 AGACAAAAAGGCTGGAGTATAGTCAACTTACTGGT 8705 ||||||||||| |||||||| || || || || || Sbjct 150 AGACAAAAAGGGTGGAGTATTGTGAATTTGCTCGT 116 >seq283927 Length=152763 Score = 138 bits (152), Expect = 9e-29 Identities = 293/432 (68%), Gaps = 14/432 (3%) Strand=Plus/Minus Query 8139 AGAATTCCTAACAGAAGTAAATGACAATGGGCTAGATATGGAGCATCTTGTAATCGGGCT 8198 ||| || |||| | || |||||||| || | || | || |||| | || || | Sbjct 1708 AGACTTTCTAAGACAAAAGAATGACAACGGATTGGACAGAGATGATCTCATCATTGGATT 1649 Query 8199 GAGAGGAAAGGAAAGAGAAATCAA-AAGGATAGGTCGATTCTTCGCTCTTATGTCATGGA 8257 | |||||||||| | |||||||| ||||| ||| |||||||| | || ||||| |||| Sbjct 1648 AAAAGGAAAGGAATGTGAAATCAAGAAGGA-AGGAAGATTCTTCTCCCTAATGTCCTGGA 1590 Query 8258 AGCTGAGAGATTACTTCGTAATTACAGAA---TATTTAATTAAAT-TACATTTCGTCCCT 8313 | || | | || ||||| ||||||||| || | || || | ||||| || Sbjct 1589 ATCTTCAACAATATTTCGTCATTACAGAAACCTACTAAAGGAATTCTACATA-----CCC 1535 Query 8314 CTCTTCTCCGGATTAACTATGGCAGATGATCTAAACACAGTTGTTaaaaaaaTGCTCGAT 8373 || || | ||| | || |||||||| || | | ||| | ||||| || | || Sbjct 1534 CTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCAAAAAAGTTGTTAGAC 1475 Query 8374 ACATCTAATGGACAAGGGTTAGACGTTTACGACTATATCACAATGGCAAATCATATAGAT 8433 | || ||||||||| |||| |||| | | || || || || || ||||| ||| Sbjct 1474 AATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCATTGCCAACCATATCGAT 1415 Query 8434 TATGAGAAATGGAATAACCATCAAAGAGGAGAGGCAAACAATCCTGTCTTCACTGTCATG 8493 || || ||||||||||| || |||| |||| || ||||| || || |||| || ||| Sbjct 1414 TACGAAAAATGGAATAATCACCAAA---GAGATGCTAACAACCCGGTGTTCAGCGTGATG 1358 Query 8494 GGTCAGTTTCTAGGATATCCAAGCCTCATAACAAGAACACATGAGTTCTTTGAAAAAAGC 8553 || || || | ||| |||| | | |||| | || || | ||||||||||| || Sbjct 1357 GGGCAATTCTTGGGACTGCCAAACTTGTTAACTCGCACCCACAAATTCTTTGAAAACAGT 1298 Query 8554 TTGATCTATTAC 8565 || || |||||| Sbjct 1297 TTAATTTATTAC 1286 >seq133769 Length=136818 Score = 134 bits (148), Expect = 1e-27 Identities = 679/1064 (64%), Gaps = 35/1064 (3%) Strand=Plus/Minus Query 7672 TACGGGTCATTCAGACATTGGGGCCATCCATTCCTGGAATACTTGGAAGGACTAAAGAAA 7731 || || ||||||||||||||||||||||||||| |||| ||| || || || ||||| Sbjct 123158 TATGGCTCATTCAGACATTGGGGCCATCCATTCTTGGATTACCAAGATGGCCTCCAGAAA 123099 Query 7732 TTAAGAGAACAAACAACATTACCT----AAACAGATAGACACAGACTATGCTAACAAACT 7787 || ||| |||| | | | || |||||||||||||||||||| | ||| Sbjct 123098 CTAC----ACACACAAGTTCAAATGGAGAAGGAGATAGACACAGACTATGCTGAATCACT 123043 Query 7788 GGCAAGTGACCTAGCATACATCGTTTTGAAGAATCAATTTGACAAGAACAAAAAATGGTT 7847 ||||||||| ||||| | ||| || ||| |||| |||| ||| | | ||||||| Sbjct 123042 GGCAAGTGATCTAGCCTTCATGGTGTTGGAGAAAGAATTCCACACTCAGCGACAATGGTT 122983 Query 7848 TGTTGATGTCGATCGTCTCCCTCCTGATCACAAGCTTAGAGATAATATTGTAAACAATAC 7907 ||| ||| | || | ||| | | | | | ||| || | ||| | || Sbjct 122982 TGTCGATTTGGACAAAATGAATCCACAGGATCCGATGACGGATCATGTGAGAAATCAAAC 122923 Query 7908 CTGGCCCACTCCCTTCCAAATCAAAGACTTCCAAGATGAGTGGCATCGACTCCCGCTGTC 7967 ||||| || || | ||||| |||| | | ||| ||||||||| ||||| || | Sbjct 122922 ATGGCCTACCCCTCTTGAAATCCAAGAGTACGGAGACAAGTGGCATCTTCTCCCATTGAC 122863 Query 7968 AAAGTG-TTTTGAGATTCCAGATGTTGTTGATCCAAGCTTAATTTATGCAGACAAAAGTC 8026 | || | | || | ||| | | ||||||| | | | || ||||| |||| Sbjct 122862 AGCTTGCTACTCAG-TGCCACAAACTATTGATCCCTCCGTTCTCTACAGTGACAAGAGTC 122804 Query 8027 ATTCAGTATGCAGGTCTGAAATTATTGAACATATAAAGTCA--AACCCTAT-GACACCAA 8083 |||| | | | |||| || | | ||| | || || | || || || | || Sbjct 122803 ATTCCATGAACCGTACTGATGTTCTGAACCATGT-GAGACAGTATCCGAATCGAGA--AA 122747 Query 8084 TTCCTTCGAAAAAAG-TCTTAGAGACATTTATAAATACTCCTGCTACAAACTGGAAAGAA 8142 ||||||| | ||||| ||| ||| ||| | | | || ||| |||| ||||| Sbjct 122746 TTCCTTCCAGAAAAGTTCTGAGA-ACAGCTCTTGAGACCCCTCAAGTAAACATCAAAGAG 122688 Query 8143 TTCCTAACAGAAGTAAATGACAATGGGCTAGATATGGAGCATCTTGTAATCGGGCTGAGA 8202 ||| | ||| | |||||||| || || | || | | | ||||| |||| Sbjct 122687 TTCTTGGAAGAGATCAATGACAAGGGCCTCCCCAGAGAAGACTTAATCATCGGACTGAAG 122628 Query 8203 GGAAAGGAAAGAGAAATCAA-AAGGATAGGTCGATTCTTCGCTCTTATGTCATGGAAGCT 8261 ||||| || ||||| | || || || |||||||| ||| |||| ||||| |||||| | Sbjct 122627 GGAAAAGAGAGAGAGGTGAAGAAAGA-GGGTCGATTTTTCTCTCTCATGTCGTGGAAGTT 122569 Query 8262 GAGAGATTACTTCGTAATTACAGAATATTTAATTAAA---TTACATTTCGTCCCTCTCTT 8318 || | ||||| || |||||| || | || ||| || || || || || || Sbjct 122568 ACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTAT---GTACCACTGTT 122512 Query 8319 CTCCGGATTAACTATGGCAGATGATCTAAACACAGTTGTTaaaaaaaTGCTCGATACATC 8378 ||| | || ||||| || || || | | |||| || ||| | ||||| | || Sbjct 122511 TAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTTCTCGACAGTTC 122452 Query 8379 TAATGGACAAGGGTTAGACGTTTACGACTATATCACAATGGCAAATCATATAGATTATGA 8438 | ||||| | | ||| | || | || || ||| | ||||| | Sbjct 122451 TTTACATCAAGGACGAACAGACTACTCATCCATTTGTGTAGCCAACCATGTTGATTACCA 122392 Query 8439 GAAATGGAATAACCATCAAAGAGGAGAGGCAAACAATCCTGTCTTCACTGTCATGGGTCA 8498 || ||||| || |||||| | || ||| |||||| ||||||||| ||||||||||| Sbjct 122391 AAAGTGGAACAATCATCAACGTGGTTCGGCTAACAATACTGTCTTCAGAGTCATGGGTCA 122332 Query 8499 GTTTCTAGGATATCCAAGCCTCATAACAAGAACACATGAGTTCTTTGAAAAAAG-CTTGA 8557 |||| | ||| ||| || | ||||| ||||||||||| || || || |||| Sbjct 122331 GTTTGTGGGACTACCAGAACTTTTCGTGAGAACGCATGAGTTCTTCGAGAACAGTCTTG- 122273 Query 8558 TCTATTACAACAACAGAACAGACCTAATG--TATGTAAGAGATGGGGTTGTTTTGAACAA 8615 |||| || |||| | || ||||| ||| || |||| | ||||| | Sbjct 122272 TCTACTATGGACCCAGACCGGATTTAATGGACATGCAA-----GGGGATACTTTGATTAG 122218 Query 8616 AGATGATGACACGCCTGTCTGTTGGAATGGTCAGGCCGGAGGACTAGAGGGGCTGAGACA 8675 | | ||| || || || ||| | || || ||||| || || || || ||||| Sbjct 122217 CAAAGCAGACTATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGAAGGCCTAAGACA 122158 Query 8676 AAAAGGCTGGAGTATAGTCAACTTACTGGTAATCAAGAGAGAGG 8719 ||| || ||||| || || || | || ||| || | |||||| Sbjct 122157 AAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCGAGAGG 122114 >seq74890 Length=25801 Score = 132 bits (146), Expect = 4e-27 Identities = 279/412 (68%), Gaps = 12/412 (3%) Strand=Plus/Plus Query 8156 TAAATGACAATGGGCTAGATATGGAGCATCTTGTAATCGGGCTGAGAGGAAAGGAAAGAG 8215 |||||||| |||| || || || |||| | |||||| ||| ||||||||| ||| Sbjct 8672 TAAATGACGATGGACTTGAACAAGATGGTCTTATCATCGGGTTGAAGGGAAAGGAACGAG 8731 Query 8216 AAATCAAA-AGGATAGGTCGATTCTTCGCTCTTATGTCATGGAAGCTGAGAGATTACTTC 8274 | || ||| |||| ||| || || | | | ||||| || || | || | |||||| Sbjct 8732 AGATTAAACAGGA-AGGACGCTTAGTTTCCTTAATGTCCTGAAATGTAAGGCAATACTTC 8790 Query 8275 GTAATTACAGAATATTTAATTAA--ATTACATTTCGTCCCTCTCTTCTCCGGATTAACTA 8332 |||| || || || | || | | |||| || || || || | | | ||||| Sbjct 8791 ATAATCACCAAACATCGCCTGAAGGAGTTCATT--GTTCCACTGCTCCCAGCCTGAACTA 8848 Query 8333 TGGCAGATGATCTAAACACAGTTGTTaaaaaaaTGCTCGATACATCTAATGGACAAGGGT 8392 ||| ||||| | | | ||| || || |||| || | || |||||| Sbjct 8849 TGGTGGATGACTTGACTAAAGTAACAAACAAGTTGCTTGACAACTCCCTCTGACAAG--- 8905 Query 8393 TAGACGTTTACGACTATATCACAATGGCAAATCATATAGATTATGAGAAATGGAATAACC 8452 ||| ||||| | |||||||| || |||| | ||||||| |||||||||||||||| Sbjct 8906 ---ACGACTACGAATCCATCACAATTGCTAATCTTGTAGATTACGAGAAATGGAATAACC 8962 Query 8453 ATCAAAGAGGAGAGGCAAACAATCCTGTCTTCACTGTCATGGGTCAGTTTCTAGGATATC 8512 | || ||| || ||||||||||| || | |||||| ||||| |||| || ||| | Sbjct 8963 ACCAGCGAGCCGATGCAAACAATCCAGTTTACACTGTAATGGGATAGTTGCTCGGACTAC 9022 Query 8513 CAAGCCTCATAACAAGAACACATGAGTTCTTTGAAAAAAGCTTGATCTATTA 8564 || ||| | | | |||||| | |||||||||| ||| |||| |||||| Sbjct 9023 AAAATCTCTTTGCCTGGACACATTAATTCTTTGAAACAAGTTTGAGCTATTA 9074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41651690021312