Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_033006.1 Length=11332 Score E Sequences producing significant alignments: (Bits) Value seq133769 96.9 2e-16 seq219500 89.7 4e-14 >seq133769 Length=136818 Score = 96.9 bits (106), Expect = 2e-16 Identities = 118/159 (74%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 7076 GTAAATTAGGATTAAAGATCAATAAGGATGAGACAATGCAATCAGCA--GACTTCCTGAG 7133 ||||| | ||||| ||||| | |||||||| |||||| |||| || || ||| Sbjct 121945 GTAAACTGGGATTGCTAATCAACAGAGATGAGACCATGCAA--AGCACTGATTTTCTGTC 121888 Query 7134 TTACGGCAAAGTGCCAATTTTCAGAGGCAATATCAGACCTCTAGAAGAGAAGAGATGGTC 7193 || ||||| || ||| | |||||||| || ||| |||| |||| | ||||||||||| Sbjct 121887 CTATGGCAAGGTACCAGTGTTCAGAGGAAACATCCTACCTTTAGAGGCAAAGAGATGGTC 121828 Query 7194 AAGGTGTTCATGTGTCACGAATGATCAATTACCTACTTT 7232 | | | |||| || || ||||||||||||||| |||| Sbjct 121827 ACGAGTTACATGCGTAACCAATGATCAATTACCTTCTTT 121789 >seq219500 Length=51628 Score = 89.7 bits (98), Expect = 4e-14 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 7078 AAATTAGGATTAAAGATCAATAAGGATGAGACAATGCA-ATCAGCAGACTTCCTGAGTTA 7136 || ||||||||| |||||| | |||||||||||||| | || ||||||| || ||| Sbjct 6309 AAGTTAGGATTACTGATCAACAGAGATGAGACAATGCAGAGCA-CAGACTTTTTGTCTTA 6251 Query 7137 CGGCAAAGTGCCAATTTTCAGAGGCAATATCAGACCTCTAGAAGAGAAGAGATGGTCAAG 7196 || ||||| || | || ||||| |||||| ||| || |||| || ||||||| || Sbjct 6250 TGGTAAAGTACCTGTCTTTAGAGGTAATATCTTACCACTGGAAGCAAAACGATGGTCCAG 6191 Query 7197 GTGTTCATGTGTCACGAATGATCAATTACCTACTTT 7232 |||| ||||| |||||||| | ||| |||| Sbjct 6190 AGTCACATGCGTCACCAATGATCAGCTTCCTTCTTT 6155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35996943861248