Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_033034.1 Length=13000 Score E Sequences producing significant alignments: (Bits) Value seq283927 113 4e-21 seq219500 109 5e-20 seq133769 104 2e-18 seq190743 86.0 5e-13 >seq283927 Length=152763 Score = 113 bits (124), Expect = 4e-21 Identities = 348/526 (66%), Gaps = 18/526 (3%) Strand=Plus/Minus Query 7866 ATCAACCATTTAAACAAGAATCCCACAAAACCAATTCCCACaaaaaaaGTGTTAAAAACC 7925 ||||| ||||| | || | || | | || |||||| || ||||||||||| |||| Sbjct 1797 ATCAAGCATTTGAGAGAGCACCCAAAACAAGAAATTCCATCACAAAAAGTGTTACGAACC 1738 Query 7926 T-TATTGAGTGAAC-CCGCTACTGACTG-GAAAGAATTTTTAAAAGCAATTAATGATGTC 7982 | | || ||| || | | | | || | ||| ||| ||| | || ||||| | Sbjct 1737 GCTCTGGA---AACTCCACAAGTTAATGTGCGAGACTTTCTAAGACAAAAGAATGACAAC 1681 Query 7983 GGATTATCCTGGGATGATTTGGTCATCGGACTGAAAGAAAAGGAGCGGGAATTGAAAACA 8042 ||||| | | |||||| | |||| ||| | |||| |||||| | ||| | || | Sbjct 1680 GGATTGGACAGAGATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAG 1621 Query 8043 GCAGGACGTTTCTTTTCATTAATGTCTTGGAAGCTGAGAGAATATTTTGTAATAACTGAA 8102 | |||| | ||||| || ||||||| ||||| || | ||||||| || || || ||| Sbjct 1620 GAAGGAAGATTCTTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA 1561 Query 8103 TATCTCATAAAAACCTTTTATGTCCCTCTTTTTTATGGATTAACAATGGCTGATGACTTA 8162 | || |||| || || | || || ||| ||| | || ||||| || ||||| Sbjct 1560 -ACCTACTAAAGGAATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTG 1502 Query 8163 GTTACTGTTATGAGAAAAATGCTCGAAACATCATCTGGACAAGGATTGGATAATTATGAT 8222 | || | ||| || | || | ||| | |||||||| ||| |||| | Sbjct 1501 ATGGAAGTCGCAAAAAAGTTGTTAGACAATTCACCGGGACAAGGGCAGGACGATTACCAA 1442 Query 8223 GTGAT--CTATTTGGCCAATCACATCGATTATGAGAAATGGAATAACCACCAACGACAAG 8280 |||| | ||| ||||| || |||||||| || ||||||||||| |||||| || | | Sbjct 1441 TTGATTACCATT--GCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAGAGATG 1384 Query 8281 C-CTCGACTGGTCCTGTATTTAAGGTGATGGGACAATTCTTGGGTTACCCTAATTTAATT 8339 | | || || || || | |||||||| ||||||||||| || || || || Sbjct 1383 CTAACAAC----CCGGTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTT-GTT 1329 Query 8340 TAC-AGAACACACGAATTTTTTGAGAAAAGCCTGATTTATTATGGA 8384 || | || ||| |||| ||||| || || | |||||||| ||| Sbjct 1328 AACTCGCACCCACAAATTCTTTGAAAACAGTTTAATTTATTACGGA 1283 >seq219500 Length=51628 Score = 109 bits (120), Expect = 5e-20 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 8693 AGGAACTGAGAGATTAGGATTGATTATAAATAGAGATGAAACAATGCAAAGTGCTGATTA 8752 ||| || ||| |||||||| | || || |||||||| |||||||| || | || | Sbjct 6319 AGGGACAAAGAAGTTAGGATTACTGATCAACAGAGATGAGACAATGCAGAGCACAGACTT 6260 Query 8753 CCTGAATTATGGCAAGATTCCCTTCTTTAGGGGGAATTTGAGAAATCTTGAAACCAAACG 8812 || |||||| || | || ||||||| || ||| | | || ||| | ||||| Sbjct 6259 TTTGTCTTATGGTAAAGTACCTGTCTTTAGAGGTAATATCTTACCACTGGAAGCAAAACG 6200 Query 8813 ATGGTCTAGAGTCACTTGCGTCACCAATGATCAAATTCCAACTTTGGCAAACGTGATGTC 8872 |||||| |||||||| ||||||||||||||||| |||| ||||| | || ||| | || Sbjct 6199 ATGGTCCAGAGTCACATGCGTCACCAATGATCAGCTTCCTTCTTTGTCTAATGTGCTCTC 6140 Query 8873 TTCAGTTACAACAAATGC 8890 | | | |||||||||| Sbjct 6139 TACCATCTCAACAAATGC 6122 >seq133769 Length=136818 Score = 104 bits (114), Expect = 2e-18 Identities = 904/1437 (63%), Gaps = 50/1437 (3%) Strand=Plus/Minus Query 7494 TCATTCAGGCATTGGGGACATCCCTTTATAGATACACTCGCCGGATTAGAGAAGTTATAC 7553 |||||||| |||||||| ||||| || | ||| | | || | |||| || || Sbjct 123152 TCATTCAGACATTGGGGCCATCCATTCTTGGATTACCAAGATGGCCTCCAGAAACTACAC 123093 Query 7554 ACACAAGTT-ACATGCGAAAAAGATATTGATGAATCTTATGCCGAAATGTTAGCAAGTGA 7612 ||||||||| | ||| || || || || || | ||||| ||| | |||||||| Sbjct 123092 ACACAAGTTCAAATG-GAGAAGGAGATAGACACAGACTATGCTGAATCACTGGCAAGTGA 123034 Query 7613 CTTAGCTTATATTGTACTTGAAGACCAATTCAAGaaaaagaaaaaaTGGTTTGTCAACTT 7672 |||| | || || | || | ||||| | | || | ||||||||||| | || Sbjct 123033 TCTAGCCTTCATGGTGTTGGAGAAAGAATTCCACACTCAGCGACAATGGTTTGTCGATTT 122974 Query 7673 GGAAGAACTC---CCACGAGACC--ATCACTTGTATCCCTTTGTCAAATCACAAACCTGG 7727 ||| || | |||| || | || || | ||| | || |||||| ||| ||| Sbjct 122973 GGACAAAATGAATCCACAGGATCCGATGAC--GGATCA-TGTGAGAAATCA--AACATGG 122919 Query 7728 CCTACTGCCAATATTATTGAGGATTTTGGAGACAATTGGCATAAACTCCCATTGATTAAG 7787 ||||| | | || | || | |||||||| |||||| |||||||||| || Sbjct 122918 CCTACCCCTCTTGAAATCCAAGAGTACGGAGACAAGTGGCATCTTCTCCCATTGAC--AG 122861 Query 7788 ---GCGTTTGAGATCCCTGATGTTATAGATCCTTCCATTATATATTCCGATAGAAGTCAT 7844 || | || | || | ||| ||||| ||| || | || || | |||||| Sbjct 122860 CTTGCTACTCAG-TGCCACAAACTATTGATCCCTCCGTTCTCTACAGTGACAAGAGTCAT 122802 Query 7845 TCAATGAATAGAAGTGAGATTATCAACCATTTAAACAAGAATCCCACAAAACCAATTCCC 7904 || ||||| | | ||| || | |||||| | | || |||| | | |||||| Sbjct 122801 TCCATGAACCGTACTGATGTTCTGAACCATGTGAGACAGTATCCGAATCGAGAAATTCCT 122742 Query 7905 ACaaaaaaaGTGTTAAAAACCT-TATTGAGTGAACCCGCTACTGA-CTGGAAAGAATTTT 7962 | | |||||| | | ||| | ||||| | ||| | | | | | ||||| || | Sbjct 122741 TCCAGAAAAGTTCTGAGAACAGCTCTTGAG--ACCCCTCAAGTAAACATCAAAGAGTTCT 122684 Query 7963 TAAAAGCAATTAATGATGTCGGATTATCCTGGGATGATTTGGTCATCGGACTGAAAGAAA 8022 | ||| || ||||| || | || | || || || ||||||||||||| | || Sbjct 122683 TGGAAGAGATCAATGACAAGGGCCTCCCCAGAGAAGACTTAATCATCGGACTGAAGGGAA 122624 Query 8023 AGGAGCGGGAATTGAAAACAGCAGGACGTTTCTTTTCATTAATGTCTTGGAAGCTGAGAG 8082 | ||| | || |||| | || || || || || || | ||||| |||||| | || Sbjct 122623 AAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCATGTCGTGGAAGTTACGAC 122564 Query 8083 AATATTTTGTAATAACTGAATATCTCATAAAAACCTTTTATGTCCCTCTTTTTTATGGAT 8142 |||| ||||| ||| ||| ||||||||||| || ||||| || || ||| |||| Sbjct 122563 AATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTATGTACCACTGTTTAGTGGAC 122504 Query 8143 TAACAATGGCTGATGACTTAGTTACTGTTATGAGAAAAATGCTCGAAACATCATCTGGAC 8202 | |||||||| || ||| | | |||| | ||| | ||||| | || | | Sbjct 122503 TTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTTCTCGACAGTTCTTTACATC 122444 Query 8203 AAGGATTGGATA-ATTATGATGTGATCTATTTG----GCCAATCACATCGATTATGAGAA 8257 ||||| | | | | || | ||| ||||| ||||| || | ||||| | || Sbjct 122443 AAGGA-CGAACAGACTA----CTCATCCATTTGTGTAGCCAACCATGTTGATTACCAAAA 122389 Query 8258 ATGGAATAACCACCAACGACAAGCCTCGACT---GGTCCTGTATTTAAGGTGATGGGACA 8314 ||||| || || ||||| | ||| || | |||| || | || ||||| || Sbjct 122388 GTGGAACAATCATCAACG---TGGTTCGGCTAACAATACTGTCTTCAGAGTCATGGGTCA 122332 Query 8315 ATTCTTGGG-TTACCCTAATTTAATTTACAGAACACACGAATTTTTTGAGAAAAGCCTGA 8373 || |||| |||| || || | ||||| || || || || ||||| || || Sbjct 122331 GTTTGTGGGACTACCAGAACTT-TTCGTGAGAACGCATGAGTTCTTCGAGAACAGTCTTG 122273 Query 8374 TTTATTATGGATATTATCCAGAATTATTGAGTGTTGTAAATGGGGA-AGTTGCA--AATA 8430 | || |||||| || || ||| || | || || ||||| | || | | | Sbjct 122272 TCTACTATGGACCCAGACCGGATTTAATG-GACATGCAA--GGGGATACTTTGATTAGCA 122216 Query 8431 ATTCTGATAAACGAGTGTGCTGGAATGGCCAGGCAGGAGGGCTGGAAGGGTTACGTCAGA 8490 | | || | | || |||||| | || || |||||| || ||||| || | || | Sbjct 122215 AAGCAGACTATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGAAGGCCTAAGACAAA 122156 Query 8491 AGGGATGGAGCATTTTAAACTTATTGGTAATTAGGAGAGAAGGAGCTCATCGAAATACAC 8550 |||| ||||||||| |||| | | ||| | | |||| | | || || || Sbjct 122155 AGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCGAGAGGCAAAAACCCGTAACACTT 122096 Query 8551 AAGTGAGATGTCTAGCTCAAGGAGACAATCAGGTTATCTGCACCTTATACAAACT-TCAG 8609 ||| | | |||| ||||| ||||| || || ||||||| | | || || | | Sbjct 122095 TAGTTAAAACATTAGCGCAAGGGGACAACCAAGTGATCTGCAACATGTATCGTCTCCCTG 122036 Query 8610 AAATATCGAACACAAGAGGAACTCCAAGAAAACATCCAGCGGGTGGTTGATAATAATAAT 8669 ||| | | | | ||| ||| || | |||| || | || | | ||||| | Sbjct 122035 AAACAACCATC-GGAGAAGAAATCGAGGAAAGAATTCGAGAAGTCATCAAGAATAACGAA 121977 Query 8670 GTGATATTAAATAGAATTATCA-AAGGAACTGAGAGATTAGGATTGATTATAAATAGAGA 8728 | ||| | | | | | ||| |||||| | | | |||||| | || || ||||| Sbjct 121976 GCCATAATGACT-GCCGTGTCAGCAGGAACACGTAAACTGGGATTGCTAATCAACAGAGA 121918 Query 8729 TGAAACAATGCAAAGTGCTGATTACCTGAATTATGGCAAGATTCCCTTCTTTAGGGGGAA 8788 ||| || |||||||| |||||| ||| ||||||||| | || | || || || || Sbjct 121917 TGAGACCATGCAAAGCACTGATTTTCTGTCCTATGGCAAGGTACCAGTGTTCAGAGGAAA 121858 Query 8789 TTTGAGAAATCTTGAAACCAAACGATGGTCTAGAGTCACTTGCGTCACCAATGATCAAAT 8848 | | | | || | || ||||||| |||| || ||||| |||||||||||| | Sbjct 121857 CATCCTACCTTTAGAGGCAAAGAGATGGTCACGAGTTACATGCGTAACCAATGATCAATT 121798 Query 8849 TCCAACTTTGGCAAACGTGATGTCTTCAGTTACAACAAATGCATTAACAGTGGCCCA 8905 || ||||| | || || | || | || |||||||||| | ||||| || || Sbjct 121797 ACCTTCTTTGTCCAATGTACTTTCAACCATTTCAACAAATGCTATCACAGTAGCTCA 121741 >seq190743 Length=4772 Score = 86.0 bits (94), Expect = 5e-13 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 8052 TTCTTTTCATTAATGTCTTGGAAGCTGAGAGAATATTTTGTAATAACTGAATATCTCATA 8111 |||||||| ||||||| ||||| ||||| | ||||| |||||||| ||| ||||| || Sbjct 4547 TTCTTTTCCCTAATGTCATGGAATTTGAGACAGTATTTCGTAATAACCGAACATCTCTTA 4606 Query 8112 AAAACCTTTTATGTCCCTCTTTTTTATGGATTAACAATGGCTGATGACTT 8161 ||| ||||||||||| || | | ||| | || ||| | |||||||| Sbjct 4607 AAAGAGTTTTATGTCCCACTCCTCTCAGGAGTGACCATGACAGATGACTT 4656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41312356605632