Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_033070.1 Length=11145 Score E Sequences producing significant alignments: (Bits) Value seq283927 113 3e-21 >seq283927 Length=152763 Score = 113 bits (124), Expect = 3e-21 Identities = 232/336 (69%), Gaps = 17/336 (5%) Strand=Plus/Minus Query 6201 AGATCATCTGATCATTGGATTAAGAGCAAAAGAGCGAGAACTTAAAGAAGAAGGAAGGTT 6260 |||| |||| ||||||||||||| || ||| || | ||| | || | |||||||| || Sbjct 1669 AGATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATT 1610 Query 6261 CTTTGCACTTATGTCTTGGGAAATCAGAGATTATTTTGTGATGACAGAGTATCTTATCAA 6320 ||| | || ||||| ||| | | | | ||||| || || ||||| | || | || Sbjct 1609 CTTCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGA-AACCTACTAAA 1551 Query 6321 AACACACTTTGTACCTCTGTTCAAAGGTCTGACAATGGCAGACGATTTGACAACTGTAA- 6379 | || |||| || || ||| || || ||||||||||| |||| || || Sbjct 1550 GGAATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGA----TGGAAG 1495 Query 6380 TCGGAAAAA---TTTTAGAGAATACAGAGGGACAAGGAGAAACAGGGTATGAGAAT--AT 6434 ||| ||||| | ||||| ||| || ||||||||| | | | | | | ||| || Sbjct 1494 TCGCAAAAAAGTTGTTAGACAATTCACCGGGACAAGG-GCAGGACGAT-TACCAATTGAT 1437 Query 6435 CACGGTTTCAAACCATATAGATTACGAGAAATGGAACAACCACCAAAGGAAAGAGGCCAA 6494 || || | |||||||| |||||||| |||||||| || |||||||| ||| || || Sbjct 1436 TACCATTGCCAACCATATCGATTACGAAAAATGGAATAATCACCAAAG---AGATGCTAA 1380 Query 6495 TAATCCTGTGTTTGATGTAATGGGGAAATTCCTTGG 6530 || || ||||| || |||||| |||| ||||| Sbjct 1379 CAACCCGGTGTTCAGCGTGATGGGGCAATT-CTTGG 1345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35401031281392