Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_033103.1 Length=13161 Score E Sequences producing significant alignments: (Bits) Value seq49187 138 9e-29 seq90283 96.9 3e-16 seq283927 95.1 1e-15 seq133769 95.1 1e-15 >seq49187 Length=20191 Score = 138 bits (152), Expect = 9e-29 Identities = 250/366 (68%), Gaps = 0/366 (0%) Strand=Plus/Plus Query 8135 ATGAGCTTGTCATCGGTCTCAAAGAAAAGGAGCGAGAAATAAAAAAGAAGGGACGGTTTT 8194 |||| || | ||||| ||||||| |||||| ||||| |||| || ||| | | || | Sbjct 6347 ATGACCTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTCT 6406 Query 8195 TCTCATTGATGTCCTGGAGTCTTCGAGATTATTTTGTGGTGACTGAGTATTTAATAAAGA 8254 |||| | ||||| |||| ||| | | || | || || ||| | ||||||||| Sbjct 6407 TCTCGCTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAAGG 6466 Query 8255 AACACTTTGTTCCACTATTCTATGGTCTGACAATGGCCGATGATCTCACGACCGTGATGA 8314 | || ||| || || |||| || |||| ||||| |||||||| || | |||| | Sbjct 6467 AGTTCTATGTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGACAA 6526 Query 8315 GGAAGATGATGGAGAATGCAAATGGACAGGGTCTGGATGATTATAGCTATATTTCTATTG 8374 ||| | | || | | | | || || | | || | |||| || |||||| | | Sbjct 6527 AGAAACTCCTAGATAGTTCGATCAACCAAGGGCAGAATTACTATAACTCCATTTCTCTGG 6586 Query 8375 CTAATCACATTGATTATGAGAAGTGGAATAATCACCAACGGTTGGAATCAACCGGACCTG 8434 | |||||| | |||||||| || |||||||| || || ||| ||| | | | |||| Sbjct 6587 CAAATCACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTCCTG 6646 Query 8435 TGTTTCGTGTAATGGGACAATTCTTAGGTTATCCAAATTTGATCTATAGGACACATGAGT 8494 |||| || |||||||| || ||| |||||| || | || || | | || ||||||| Sbjct 6647 TGTTCCGAGTAATGGGTCAGTTCCTAGGTTTGCCTGAGCTGTTCGTTCGCACTCATGAGT 6706 Query 8495 TCTTTC 8500 |||||| Sbjct 6707 TCTTTC 6712 >seq90283 Length=1560 Score = 96.9 bits (106), Expect = 3e-16 Identities = 241/365 (66%), Gaps = 2/365 (1%) Strand=Plus/Plus Query 8137 GAGCTTGTCATCGGTCTCAAAGAAAAGGAGCGAGAAATAAAAAAGAAGGGACGGTTTTTC 8196 || || ||||| || ||||| | ||||| || ||| | || ||| |||| | |||||| Sbjct 230 GACCTGGTCATAGGGCTCAAGGGGAAGGAACGGGAAGTCAAGAAGGAGGGGAGATTTTTC 289 Query 8197 TCATTGATGTCCTGGAGTCTTCGAGAT--TATTTTGTGGTGACTGAGTATTTAATAAAGA 8254 || | |||| |||| | |||| || || ||| ||| ||||| | || ||| Sbjct 290 TCCCTCATGTTATGGAACTTAAGAGACAGTACTTCGTGTCGACCGAGTACCTCATCAAGG 349 Query 8255 AACACTTTGTTCCACTATTCTATGGTCTGACAATGGCCGATGATCTCACGACCGTGATGA 8314 | | | |||||| || |||| ||| | |||||||| || ||| | || | |||| | Sbjct 350 AGCTGTATGTTCCGCTCTTCTCTGGATTAACAATGGCGGACGATTTGACCAAAGTGACCA 409 Query 8315 GGAAGATGATGGAGAATGCAAATGGACAGGGTCTGGATGATTATAGCTATATTTCTATTG 8374 ||| | |||| ||| | | || || ||||| || | || |||||| ||| Sbjct 410 AAAAGTTACTGGATAATTCCATCAATCAAGGATCAGATGACTACAACTCCATTTCTCTTG 469 Query 8375 CTAATCACATTGATTATGAGAAGTGGAATAATCACCAACGGTTGGAATCAACCGGACCTG 8434 | || || || || ||||| || ||||| || ||||| || | | | | || || | Sbjct 470 CAAACCATATAGACTATGAAAAATGGAACAACCACCAGAGGGGAGCAGCTAACGATCCAG 529 Query 8435 TGTTTCGTGTAATGGGACAATTCTTAGGTTATCCAAATTTGATCTATAGGACACATGAGT 8494 || | || |||||||||||| | |||| | | | ||| | | ||||| |||| Sbjct 530 CTTTAAGAGTCATGGGACAATTCATCGGTTTACTAGAGTTGTTTGTTCAAACACACGAGT 589 Query 8495 TCTTT 8499 ||||| Sbjct 590 TCTTT 594 >seq283927 Length=152763 Score = 95.1 bits (104), Expect = 1e-15 Identities = 228/342 (67%), Gaps = 6/342 (2%) Strand=Plus/Minus Query 8135 ATGAGCTTGTCATCGGTCTCAAAGAAAAGGAGCGAGAAATAAAAAAGAAGGGACGGTTTT 8194 |||| || |||| || | |||| |||||| | ||||| || ||| | ||| | || | Sbjct 1667 ATGATCTCATCATTGGATTAAAAGGAAAGGAATGTGAAATCAAGAAGGAAGGAAGATTCT 1608 Query 8195 TCTCATTGATGTCCTGGAGTCTTCGAGATTATTTTGTGGTGACTGAGTATTTAATAAAGA 8254 |||| | |||||||||| ||||| | | ||||| || | || || | || ||||| Sbjct 1607 TCTCCCTAATGTCCTGGAATCTTCAACAATATTTCGTCATTACAGAA-ACCTACTAAAGG 1549 Query 8255 AACACTTTGTTCCACTATTCTATGGTCTGACAATGGCCGATGATCTCACGACCGTGATGA 8314 || || | || ||||| || || || ||||| || || | | | || | Sbjct 1548 AATTCTACATACCCCTATTTGCAGGACTCACCATGGCAGACGACTTGATGGAAGTCGCAA 1489 Query 8315 GGAAGATGATGGAGAATGCAAATGGACAGGGTCTGGATGATTATAGCTATATTTCTATTG 8374 ||| || | || ||| || ||||| || | ||| ||||| | ||| | |||| Sbjct 1488 AAAAGTTGTTAGACAATTCACCGGGACAAGGGCAGGACGATTACCAATTGATTACCATTG 1429 Query 8375 CTAATCACATTGATTATGAGAAGTGGAATAATCACCAACG-GTTGGAATCAACCGGACCT 8433 | || || || ||||| || || ||||||||||||||| | | || | |||| || Sbjct 1428 CCAACCATATCGATTACGAAAAATGGAATAATCACCAAAGAGATGCTAACAAC----CCG 1373 Query 8434 GTGTTTCGTGTAATGGGACAATTCTTAGGTTATCCAAATTTG 8475 ||||| | || ||||| |||||||| || ||||| ||| Sbjct 1372 GTGTTCAGCGTGATGGGGCAATTCTTGGGACTGCCAAACTTG 1331 >seq133769 Length=136818 Score = 95.1 bits (104), Expect = 1e-15 Identities = 585/918 (64%), Gaps = 34/918 (4%) Strand=Plus/Minus Query 8144 TCATCGGTCTCAAAGAAAAGGAGCGAGAAATAAAAAAGAAGGGACGGTTTTTCTCATTGA 8203 ||||||| || || | ||| ||| |||| | || || |||| || |||||||| | | Sbjct 122641 TCATCGGACTGAAGGGAAAAGAGAGAGAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCA 122582 Query 8204 TGTCCTGGAGTCTTCGAGATTATTTTGTGGTGACTGAGTATTTAATAAAGAAACACTTTG 8263 |||| |||| | ||| | || ||||| || || || | ||||| | | || Sbjct 122581 TGTCGTGGAAGTTACGACAATACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTATG 122522 Query 8264 TTCCACTATTCTATGGTCTGACAATGGCCGATGATCTCACGACCGTGATGAGGAAGATGA 8323 | ||||| || ||| || |||||||| || || ||||| | || | | ||| | Sbjct 122521 TACCACTGTTTAGTGGACTTACAATGGCGGACGACCTCACAAAAGTTACAAAGAAACTTC 122462 Query 8324 TGGAGAATGC---AAATGGACAGGGTCTGGATGATTATAGCTATATTTCTATTGCTAATC 8380 | || | | | | || || || | || || | |||| | | || || | Sbjct 122461 TCGACAGTTCTTTACAT---CAAGGACGAACAGACTACTCATCCATTTGTGTAGCCAACC 122405 Query 8381 ACATTGATTATGAGAAGTGGAATAATCACCAACG--GTTGGAATCAACCGGACCTGTGTT 8438 | ||||||| | |||||||| ||||| ||||| ||| | | ||| || ||| || Sbjct 122404 ATGTTGATTACCAAAAGTGGAACAATCATCAACGTGGTTCGGCT-AACAATAC-TGTCTT 122347 Query 8439 TCGTGTAATGGGACAATTCTTAGGTTATCCAAATTTGATCTATAGGACACATGAGTTCTT 8498 | || ||||| || || | || ||| | | || || || ||||||||||| Sbjct 122346 CAGAGTCATGGGTCAGTTTGTGGGACTACCAGAACTTTTCGTGAGAACGCATGAGTTCTT 122287 Query 8499 TCA--ACAATCTCTGATCTACCATGGAGGTCGAGGGGATTTAATG-ACAGTCAGAGATGG 8555 | ||| ||| || ||||| ||||| || |||||||||| ||| || | || Sbjct 122286 CGAGAACAGTCT-TG-TCTACTATGGACCCAGACCGGATTTAATGGACATGCA---AGGG 122232 Query 8556 GAAAATTGTGAATTC---AGGATCCACACGTGTGTGTTGGGAGGGACAAGCCGGTGGTCT 8612 || | || ||| | || | | | || || ||||| |||||| || ||||| Sbjct 122231 GATACTT-TGATTAGCAAAGCAGACTATCCCGTATGCTGGGAAGGACAAAAAGGAGGTCT 122173 Query 8613 AGAGGGGCTTAGACAAAAGGGATGGAGTATACTAAACCTGCTAGTAATCAGACGCGAAGG 8672 || || || ||||||||||| ||||| || |||| || || ||| || || || | Sbjct 122172 CGAAGGCCTAAGACAAAAGGGGTGGAGCATTGTAAATCTTCTCGTACTCCTGCGAGAGGC 122113 Query 8673 TAGTCACCGCAACACAA-AGATAAAATGCCTGGCCCAGGGAGATAACCAGGTGATCTGCA 8731 | ||| ||||| || ||||| | || || || || ||||| |||||||||| Sbjct 122112 AAAAACCCGTAACACTTTAGTTAAAACAT-TAGCGCAAGGGGACAACCAAGTGATCTGCA 122054 Query 8732 CTCAGTAT-GAATTACAAAAGTCTCGATCAGATCAGGAAATGGAGGAAAATATATTGA-A 8789 |||| | | | || | ||| || || |||| ||||||| || | || | Sbjct 122053 ACATGTATCGTCTCCCTGAAACAACCATCGGAGAAG-AAATCGAGGAAAGAAT-TCGAGA 121996 Query 8790 AGTTGTACAGAACAATCAGG---TAATTTTAGCCAAAATTGAAGAGGGTACAAGGAAATT 8846 ||| | |||| || | | |||| ||| | || || ||| | ||| | Sbjct 121995 AGTCATCAAGAATAACGAAGCCATAATGACTGCCG---TGTCAGCAGGAACACGTAAACT 121939 Query 8847 AGGGCTTATTATCAATAAAGATGAGACCATGCAAAGTGCAGACTATCTAAACTACGGGAA 8906 || | | ||||| | |||||||||||||||||| | || | ||| ||| || || Sbjct 121938 GGGATTGCTAATCAACAGAGATGAGACCATGCAAAGCACTGATTTTCTGTCCTATGGCAA 121879 Query 8907 AGTTCCGGTGGTTAGAGGCAATATAAGAGCGTTAGAGACTAAGCGGTGGGCAAGGGTGAC 8966 || || ||| | ||||| || || | | |||||| | ||| | ||| || | || || Sbjct 121878 GGTACCAGTGTTCAGAGGAAACATCCTACCTTTAGAGGCAAAGAGATGGTCACGAGTTAC 121819 Query 8967 ATGTGTGACAAATGATCAGATACCAACACTTTCAAATGTCATGGCCACAGTTTCCACCAA 9026 ||| || || |||||||| |||| | | || ||||| | | || |||| || || Sbjct 121818 ATGCGTAACCAATGATCAATTACCTTCTTTGTCCAATGTACTTTCAACCATTTCAACAAA 121759 Query 9027 TGCTTTGACTGTTGCCCA 9044 |||| | || || || || Sbjct 121758 TGCTATCACAGTAGCTCA 121741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41817379118704