Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_033701.1 Length=11743 Score E Sequences producing significant alignments: (Bits) Value seq133769 176 3e-40 seq176488 149 5e-32 seq292816 86.0 5e-13 seq268548 82.4 6e-12 >seq133769 Length=136818 Score = 176 bits (194), Expect = 3e-40 Identities = 427/633 (67%), Gaps = 18/633 (3%) Strand=Plus/Minus Query 6667 GAAATAAATGACAACGGTGTCAA-AGAGAATAGTCTGGTCATTGGACTGAAGGGAAAAGA 6725 || || |||||||| || || |||||| | | | |||| ||||||||||||||||| Sbjct 122678 GAGATCAATGACAAGGGCCTCCCCAGAGAAGACT-TAATCATCGGACTGAAGGGAAAAGA 122620 Query 6726 GAGAGAAGTTAA-AAGGATTGGTCGAtttttttCACTAATGTCTTGGGAACTACGAATGT 6784 |||||| || || || || ||||||||||| || || ||||| ||| | ||||| | Sbjct 122619 GAGAGAGGTGAAGAAAGAG-GGTCGATTTTTCTCTCTCATGTCGTGGAAGTTACGACAAT 122561 Query 6785 ACTTTGTAGTAACGGAATACTTGATTAAAAAGTTTTTTGTACCTTTGTTCTCAGGTTTAA 6844 ||||||| ||| ||| | | || ||| |||| | |||||| |||| || | | Sbjct 122560 ACTTTGTCTCAACAGAACATCTCATAAAAGAGTTGTATGTACCACTGTTTAGTGGACTTA 122501 Query 6845 CAATGGCCGACGA--TTACAATTCAGTAATTAAGAAAATGTTGGACCGGGCGACAGGTCA 6902 ||||||| ||||| | |||| ||| | |||||| | | ||| | | | ||| Sbjct 122500 CAATGGCGGACGACCTCACAAA--AGTTACAAAGAAACTTCTCGACAGTTCTTTACATCA 122443 Query 6903 AGGTGAATCTGATTACCAGTATATAACATTTGCAAATCATTTTGACTATTCGAAATGGAA 6962 ||| | | || ||| | || | || || ||| |||| || || ||||| Sbjct 122442 AGGACGAACAGACTACTCATCCATTTGTGTAGCCAACCATGTTGATTACCAAAAGTGGAA 122383 Query 6963 CAATACTCAACGAGGGGCTGCCAATGACCCAGTCTTCCTTGTCATGGGTAAATTTTTAGG 7022 |||| |||||| || | || || | | |||||| ||||||||| | ||| | || Sbjct 122382 CAATCATCAACGTGGTTCGGCTAACAATACTGTCTTCAGAGTCATGGGTCAGTTTGTGGG 122323 Query 7023 ACTACCGAAACTCTTTGTAAGAACCCACGAGTTTTTTGAGAAGAG-CTGGATTTACTATA 7081 |||||| |||| || || ||||| || ||||| || ||||| || || | | |||||| Sbjct 122322 ACTACCAGAACTTTTCGTGAGAACGCATGAGTTCTTCGAGAACAGTCTTG-TCTACTATG 122264 Query 7082 ACGATCGAGGA--GATTTAATTTCTGTGCAGGATGATTGCTTGACCAACAAAACTGAGAA 7139 || | || |||||||| |||| | ||| |||| | |||| | || | Sbjct 122263 --GACCCAGACCGGATTTAATGGACATGCAAGGGGATACTTTGATTAGCAAAGCAGACTA 122206 Query 7140 AAGAGTTTGTTGGATTGGTCAAAAGGGAGGCCTAGAGGGATTAAGACAAAAAGGATGGAG 7199 || || ||| || ||||| ||||| || || || |||||||||| || ||||| Sbjct 122205 TCCCGTATGCTGGGAAGGACAAAAAGGAGGTCTCGAAGGCCTAAGACAAAAGGGGTGGAG 122146 Query 7200 CATTGTAAGTTTGCT--TATGATTGAGAGAGAAAGCAAGATCCGTAATACCCTAATCAAA 7257 |||||||| | | || || || ||||| | || | |||||| || || | ||| Sbjct 122145 CATTGTAAATCTTCTCGTACTCCTGCGAGAGGCA--AAAACCCGTAACACTTTAGTTAAA 122088 Query 7258 GTCCTAGCACAAGGAGATAATCAAGTGATCTGC 7290 |||| ||||| || || |||||||||||| Sbjct 122087 ACATTAGCGCAAGGGGACAACCAAGTGATCTGC 122055 >seq176488 Length=2532 Score = 149 bits (164), Expect = 5e-32 Identities = 420/637 (66%), Gaps = 10/637 (2%) Strand=Plus/Minus Query 6658 TTTCTCAGGGAAATAAATGACAACGGTGTCA--AAGAGAATAGTCTGGTCATTGGACTGA 6715 |||||| || || |||||||| || || ||| ||| | | || ||||||| ||| Sbjct 675 TTTCTCGAAGAGATCAATGACAAGGGCCTCCCCAAG-GAAGACT-TGATCATTGGCTTGA 618 Query 6716 AGGGAAAAGAGAGAGAAGTTAA-AAGGATTGGTCGAtttttttCACTAATGTCTTGGGAA 6774 | || || ||||||||||| || || || || | ||| || || || ||||||||| | Sbjct 617 AAGGGAAGGAGAGAGAAGTAAAGAAAGAGAGG-CAATTCTTCTCCCTCATGTCTTGGAAG 559 Query 6775 CTACGAATGTACTTTGTAGTAACGGAATACTTGATTAAAAAGTTTTTTGTACCTTTGTTC 6834 || | |||||||| ||| ||| | | || ||| | || | || || ||||| Sbjct 558 TTAAGGCAATACTTTGTCTCAACAGAACATCTTATAAAAGAATTGTACGTGCCACTGTTC 499 Query 6835 TCAGGTTTAACAATGGCCGACGA--TTACAATTCAGTAATTAAGAAAATGTTGGACCGGG 6892 || | || ||||| || || | |||| || | |||||| | | ||| | Sbjct 498 AACGGACTCACGATGGCAGATGACCTCACAA--AGGTTACAAAGAAACTTCTCGACAGTT 441 Query 6893 CGACAGGTCAAGGTGAATCTGATTACCAGTATATAACATTTGCAAATCATTTTGACTATT 6952 | | |||||| || |||||||| | || | || || ||| |||| || Sbjct 440 CTTTACATCAAGGACAAACTGATTACTCCTCCATTTGTGTGGCCAACCATGTTGATTACC 381 Query 6953 CGAAATGGAACAATACTCAACGAGGGGCTGCCAATGACCCAGTCTTCCTTGTCATGGGTA 7012 ||||||||| || |||||| || ||||| |||| ||||||| || |||||| Sbjct 380 AGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCTGTCTTCCGAGTGATGGGTC 321 Query 7013 AATTTTTAGGACTACCGAAACTCTTTGTAAGAACCCACGAGTTTTTTGAGAAGAGCTGGA 7072 | ||| | || || || |||| || || ||||| |||||||| || ||||| || | Sbjct 320 AGTTTGTGGGTCTGCCAGAACTTTTCGTCAGAACGCACGAGTTCTTCGAGAACAGTCTCA 261 Query 7073 TTTACTATAACGATCGAGGAGATTTAATTTCTGTGCAGGATGATTGCTTGACCAACAAAA 7132 | || ||| | || |||||||| || || | || ||||| || ||| Sbjct 260 TCTATTATGGACCTAGACCTGATTTAATGGAAGTACAAGGGGACACCTTGATCAGTAAAG 201 Query 7133 CTGAGAAAAGAGTTTGTTGGATTGGTCAAAAGGGAGGCCTAGAGGGATTAAGACAAAAAG 7192 | | || |||||| || || || || || || ||||| || |||||||||| Sbjct 200 CAAGTTATCCTGTCTGTTGGGAAGGCCAGAAAGGGGGTCTCGAGGGTTTGAGACAAAAAG 141 Query 7193 GATGGAGCATTGTAAGTTTGCTTATGATTGAGAGAGAAAGCAAGATCCGTAATACCCTAA 7252 | ||||| ||||| | |||||| || | | ||||| |||| ||| |||||||| Sbjct 140 GGTGGAGTATTGTGAATTTGCTCGTGCTCTTGCGAGAAGCTAAGACCCGAAATACCCTTG 81 Query 7253 TCAAAGTCCTAGCACAAGGAGATAATCAAGTGATCTG 7289 |||| ||||||||| || || || || ||||| || Sbjct 80 TCAAGACCCTAGCACAGGGGGACAACCAGGTGATATG 44 >seq292816 Length=4775 Score = 86.0 bits (94), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 6701 TGGTCATTGGACTGAAGGGAAAAGAGAGAGAAGTTAAAAGGATTGGTCGA-tttttttCA 6759 |||| |||||||||||||| |||||||||||||| |||| | || || ||||||||| Sbjct 1758 TGGTAATTGGACTGAAGGGTAAAGAGAGAGAAGTGAAAAAGGAAGGCAGATTTTTTTTCA 1699 Query 6760 CTAATGTCTTGGGAACTACGAATGTACTTTGTAGTAACGGAATACTTGATTAAAAAGTTT 6819 || ||||| ||| | || || || || || ||| || || | || || | | | Sbjct 1698 CTCATGTCATGGAATCTCCGTCAGTGTTTCGTGACAACTGAGCACCTTATAAAGGAATAT 1639 Query 6820 TTTGTACCTTTGTTCTCAGGTTTAACAATGGCCGACGAT 6858 | ||| ||| | || || || || || ||||| |||||| Sbjct 1638 TATGTTCCTCTTTTTTCTGGATTGACTATGGCAGACGAT 1600 >seq268548 Length=41840 Score = 82.4 bits (90), Expect = 6e-12 Identities = 134/186 (72%), Gaps = 13/186 (7%) Strand=Plus/Plus Query 6674 ATGACAACGGTGT-CAAAGAGAATAGTCTGGTCATTGGACTGAAGGGAAAAGAGAGAGAA 6732 |||||||||| | || |||||| | || | || |||||||| ||| || |||| Sbjct 490 ATGACAACGGACTACATAGAGAAGA-TCCAGCCA--GGACTGAAATGAA----GAAAGAA 542 Query 6733 GTTAAAAGGATTGGTCGAtttttttCACTAATGTCTTGGGAACTACGAATGTACTTTGTA 6792 || || ||| || ||||||| || || ||||| ||| |||||||| ||||||||||| Sbjct 543 GTCAA--GGAAAGGA-GATTTTTCTCGCTGATGTCCTGGAAACTACGAGTGTACTTTGTA 599 Query 6793 GTAACGGAATACTTGATTAAAAAGTTTTTTGTACCTTTGTTCTCAGGTTTAACAATGGCC 6852 |||||| | | || || ||||| | || ||||| ||| || |||| ||||| Sbjct 600 TCCACGGAACATCTCATCAAGAAGTTATACGT--TTTTGTCCTCGGGCCTAACCATGGCA 657 Query 6853 GACGAT 6858 |||||| Sbjct 658 GACGAT 663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37306676857616