Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_033703.1 Length=9314 Score E Sequences producing significant alignments: (Bits) Value seq49187 122 5e-24 seq133769 113 3e-21 seq292816 105 4e-19 seq176488 96.9 2e-16 >seq49187 Length=20191 Score = 122 bits (134), Expect = 5e-24 Identities = 248/366 (68%), Gaps = 2/366 (1%) Strand=Plus/Plus Query 4232 GAAGACCTTGTGATTGGTTTGAAAGGGAAGGAGAGAGAGGTTAAGAGAACGGGACGATAT 4291 || ||||| | || || | |||| ||||| ||||| || |||| | || | ||| Sbjct 6346 GATGACCTGATAATCGGGCTCAAAGTAAAGGAAAGAGAAGTAAAGAAAGAGGAAAGATTC 6405 Query 4292 TTCTCACTCATGAGTTGGAATCTAAGACTGTATTTTGTCATCACAGAGTATTTAATCAAG 4351 ||||| |||||| |||||||| || | || | |||| |||||| | ||||| ||| Sbjct 6406 TTCTCGCTCATGTCGTGGAATCTGAGGCAATACTCCGTCACAACAGAGCACTTAATAAAG 6465 Query 4352 AAATATTATGTACCACTTTTTTCCGGGTTGACTATGGCTGACAGTTTTAATATGGTTATG 4411 | | ||||| || ||||| || || |||||||||||||| | | | || ||| | Sbjct 6466 GAGTTCTATGTGCCCCTTTTCTCGGGATTGACTATGGCTGATGATCTGACTAAGGTGACA 6525 Query 4412 AGAAAACTGATCGATCGTAC-ATCTGGGCAAGGAGAGAAAGGATATGAAAGAATCACTTT 4470 | ||||| | ||| || | ||| ||||| |||| ||| | || || | Sbjct 6526 AAGAAACTCCTAGATAGTTCGATC-AACCAAGGGCAGAATTACTATAACTCCATTTCTCT 6584 Query 4471 TGCAAATCACTTCGATTATTCAAAATGGAACAACACACAAAGAGGGAAAGCAAATAATCC 4530 ||||||||| | |||||| ||||||||| ||| || | ||| | || |||| ||| Sbjct 6585 GGCAAATCACGTAGATTATGAAAAATGGAATAACCATCAGCGGGGGGAGGCGAATAGTCC 6644 Query 4531 AGTGTTCCGAGTTATGGGGAAATTCTTGGGGCTCCCAAATATCATCTCAAGAACTCATGA 4590 ||||||||||| ||||| | ||| | || | || | | || | |||||||| Sbjct 6645 TGTGTTCCGAGTAATGGGTCAGTTCCTAGGTTTGCCTGAGCTGTTCGTTCGCACTCATGA 6704 Query 4591 GTTCTT 4596 |||||| Sbjct 6705 GTTCTT 6710 >seq133769 Length=136818 Score = 113 bits (124), Expect = 3e-21 Identities = 440/687 (64%), Gaps = 10/687 (1%) Strand=Plus/Minus Query 4148 AAAGTTCTCAGGACAGCTTTATATACTCCGGGAGTGAATGTAAGAGAATTCCTATCAGAA 4207 |||||||| || |||||| | | || || ||| || | | ||| ||| | ||| Sbjct 122735 AAAGTTCTGAGAACAGCTCTTGAGACCCCTCAAGTAAACATCAAAGAGTTCTTGGAAGAG 122676 Query 4208 ATCAATGAGAACGGATTATCAAAGGAAGACCTTGTGATTGGTTTGAAAGGGAAGGAGAGA 4267 |||||||| || || | | | |||||| | | || || |||| || || |||||| Sbjct 122675 ATCAATGACAAGGGCCTCCCCAGAGAAGACTTAATCATCGGACTGAAGGGAAAAGAGAGA 122616 Query 4268 GAGGTTAAGAGAACGGGACGATATTTCTCACTCATGAGTTGGAATCTAAGACTGTATTTT 4327 ||||| |||| | ||| |||| |||||| |||||| ||||| || ||| || ||| Sbjct 122615 GAGGTGAAGAAAGAGGGTCGATTTTTCTCTCTCATGTCGTGGAAGTTACGACAATACTTT 122556 Query 4328 GTCATCACAGAGTATTTAATCAAGAAATATTATGTACCACTTTTTTCCGGGTTGACTATG 4387 ||| ||||| || | || || | | ||||||||||| ||| || | || ||| Sbjct 122555 GTCTCAACAGAACATCTCATAAAAGAGTTGTATGTACCACTGTTTAGTGGACTTACAATG 122496 Query 4388 GCTGACAGTTTTAATATGGTTATGAGAAAACTGATCGATCGTACATCTGGGCAAGGAGAG 4447 || ||| | | | |||| | ||||| |||| || | | |||||| Sbjct 122495 GCGGACGACCTCACAAAAGTTACAAAGAAACTTCTCGACAGTTCTTTACATCAAGGACGA 122436 Query 4448 AAAGGATATGAAAGAATCACTTTTGCAAATCACTTCGATTATTCAAAATGGAACAACACA 4507 | || || | || | | || || || | ||||| ||| |||||||| Sbjct 122435 ACAGACTACTCATCCATTTGTGTAGCCAACCATGTTGATTACCAAAAGTGGAACAATCAT 122376 Query 4508 CAAAGAGGGAAAGCAAATAATCCAGTGTTCCGAGTTATGGGGAAATTCTTGGGGCTCCCA 4567 ||| | || || || ||| | || ||| |||| ||||| | || |||| || ||| Sbjct 122375 CAACGTGGTTCGGCTAACAATACTGTCTTCAGAGTCATGGGTCAGTTTGTGGGACTACCA 122316 Query 4568 AATATCATCTCAAGAACTCATGAGTTCTTCGAGAGGAG-CTGGATTTACTACAATGACAG 4626 | | || ||||| |||||||||||||||| || || | | ||||| ||| Sbjct 122315 GAACTTTTCGTGAGAACGCATGAGTTCTTCGAGAACAGTCTTG-TCTACTATGGACCCAG 122257 Query 4627 ATCGGATTTGATGGA---ACTAGTTGAAGGTGAAATCCGC-AACCGAACCACCCAAAGAG 4682 | ||||||| ||||| | || || | || || || | || | || | Sbjct 122256 ACCGGATTTAATGGACATGCAAGGGGATACTTTGATTAGCAAAGCAGACTATCC----CG 122201 Query 4683 TTTGCTGGAATGGGCAACTGGGGGGACTTGAAGGGCTAAGACAAAAAGGATGGAGTGTGG 4742 | |||||| | || ||| || || || ||||| ||||||||||| || ||||| | | Sbjct 122200 TATGCTGGGAAGGACAAAAAGGAGGTCTCGAAGGCCTAAGACAAAAGGGGTGGAGCATTG 122141 Query 4743 TAAGCCTACTTGTAATTGAACGTGAAGGCAAAATACGAAACACAAAAATCAAAATACTCG 4802 ||| || || ||| | || || | |||| || ||||| | | |||| | | | Sbjct 122140 TAAATCTTCTCGTACTCCTGCGAGAGGCAAAAACCCGTAACACTTTAGTTAAAACATTAG 122081 Query 4803 CACAGGGGGACAATCAAGTTGTTTGCA 4829 | || |||||||| ||||| | |||| Sbjct 122080 CGCAAGGGGACAACCAAGTGATCTGCA 122054 >seq292816 Length=4775 Score = 105 bits (116), Expect = 4e-19 Identities = 196/283 (69%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 4113 TTTCGAATAGTCCGTATAAACCTATACCATCAAAGAAAGTTCTCAGGACAGCTTTATATA 4172 ||| |||| ||| ||||| || ||||||| || || || | |||||| ||| | | Sbjct 1882 TTTGGAATTACCCGGATAAAGAAATTCCATCAAGAAAGGTACTGAAGACAGCCTTAGAAA 1823 Query 4173 CTCCGGGAGTGAATGTAAGAGAA-TTCCTATCAGAAATCAATGAGAACGGATTATCAAAG 4231 | || |||||| || | |||| || || | | ||||| || || | |||| Sbjct 1822 CACCTCAAGTGAACGTCA-AGAACTTTCTTCAACACATCAACGACTCAGGTCTCTCAA-- 1766 Query 4232 GAAGACCTTGTGATTGGTTTGAAAGGGAAGGAGAGAGAGGTTAAGA-GAACGGGACGATA 4290 || ||| | || ||||| |||| || || |||||||| || || | | | || | | Sbjct 1765 GATGACTTGGTAATTGGACTGAAGGGTAAAGAGAGAGAAGTGAAAAAGGAAGGCAGATTT 1706 Query 4291 TTTCTCACTCATGAGTTGGAATCTAAGACTGTATTTTGTCATCACAGAGTATTTAATCAA 4350 ||| ||||||||| |||||||| | | || ||| || | || ||| | | || || Sbjct 1705 TTTTTCACTCATGTCATGGAATCTCCGTCAGTGTTTCGTGACAACTGAGCACCTTATAAA 1646 Query 4351 GAAATATTATGTACCACTTTTTTCCGGGTTGACTATGGCTGAC 4393 | |||||||||| || |||||||| || ||||||||||| ||| Sbjct 1645 GGAATATTATGTTCCTCTTTTTTCTGGATTGACTATGGCAGAC 1603 >seq176488 Length=2532 Score = 96.9 bits (106), Expect = 2e-16 Identities = 169/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 4147 GAAAGTTCTCAGGACAGCTTTATATACTCCGGGAGTGAATGTAAGAGAATTCCTATCAGA 4206 |||||| | |||||||| | | || || || ||| | | ||| || || ||| Sbjct 724 GAAAGTGTTGAGGACAGCACTTGAGACCCCTCAGGTCAATATCAAAGAGTTTCTCGAAGA 665 Query 4207 AATCAATGAGAACGGATTATCAAAGGAAGACCTTGTGATTGGTTTGAAAGGGAAGGAGAG 4266 |||||||| || || | | ||||||||| | | ||||| ||||||||||||||||| Sbjct 664 GATCAATGACAAGGGCCTCCCCAAGGAAGACTTGATCATTGGCTTGAAAGGGAAGGAGAG 605 Query 4267 AGAGGTTAAGAGAACGGGACGATATTTCTCACTCATGAGTTGGAATCTAAGACTGTATTT 4326 ||| || |||| | | | | || ||||| |||||| |||||| |||| | || || Sbjct 604 AGAAGTAAAGAAAGAGAGGCAATTCTTCTCCCTCATGTCTTGGAAGTTAAGGCAATACTT 545 Query 4327 TGTCATCACAGAGTATTTAATCAAGAAATATTATGTACCACTTTTTTCCGGGTTGACTAT 4386 |||| ||||| || | || || ||| || || ||||| || ||| | || || Sbjct 544 TGTCTCAACAGAACATCTTATAAAAGAATTGTACGTGCCACTGTTCAACGGACTCACGAT 485 Query 4387 GGCTGA 4392 ||| || Sbjct 484 GGCAGA 479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 29566186716064