Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_033705.1 Length=11731 Score E Sequences producing significant alignments: (Bits) Value seq176488 95.1 9e-16 seq74890 86.0 5e-13 seq219500 78.8 7e-11 >seq176488 Length=2532 Score = 95.1 bits (104), Expect = 9e-16 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 6697 GCCAATCATTTTGATTACTCCAAATGGAATAACACTCAACGAGGAAAAGCAAATAATCCT 6756 ||||| ||| |||||||| |||||||||||| |||||| || || || || ||| Sbjct 399 GCCAACCATGTTGATTACCAGAAATGGAATAACCATCAACGTGGTTTGGCCAACAACCCT 340 Query 6757 GTCTTTAAAGTTATGGGTCAATTTTTGGGGTTGCCCAATCTCTTTGTAAGGACTCATGAA 6816 ||||| ||| |||||||| ||| |||| |||| | || || || || || || || Sbjct 339 GTCTTCCGAGTGATGGGTCAGTTTGTGGGTCTGCCAGAACTTTTCGTCAGAACGCACGAG 280 Query 6817 TTCTTTGAGCAAAGTTTGATCTATTAT 6843 ||||| ||| | ||| | ||||||||| Sbjct 279 TTCTTCGAGAACAGTCTCATCTATTAT 253 >seq74890 Length=25801 Score = 86.0 bits (94), Expect = 5e-13 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 6679 TACGAATATATCACATTAGCCAATCATTTTGATTACTCCAAATGGAATAACACTCAACGA 6738 ||||||| |||||| | || |||| | | |||||| |||||||||||| || ||| Sbjct 8911 TACGAATCCATCACAATTGCTAATCTTGTAGATTACGAGAAATGGAATAACCACCAGCGA 8970 Query 6739 GGAAAAGCAAATAATCCTGTCTTTAAAGTTATGGGTCAATTTTTGGGGTTGCCCAATCTC 6798 | | ||||| ||||| || | | || ||||| | || | || | | |||||| Sbjct 8971 GCCGATGCAAACAATCCAGTTTACACTGTAATGGGATAGTTGCTCGGACTACAAAATCTC 9030 Query 6799 TTTGTAAGGACTCATGAATTCTTTGAGCAAAGTTTGATCTATTAT 6843 |||| |||| ||| |||||||||| |||||||| ||||||| Sbjct 9031 TTTGCCTGGACACATTAATTCTTTGAAACAAGTTTGAGCTATTAT 9075 >seq219500 Length=51628 Score = 78.8 bits (86), Expect = 7e-11 Identities = 137/199 (69%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 9835 AGACTTAATGATCCATTAATATCAGGACTTCGAATTGGTCAATTGGCAACAGGAGCACAT 9894 ||| | ||||| ||| | || || || ||||||||||| | || || || || ||| Sbjct 3621 AGAATCAATGACCCACTCATCCATGGGCTCAGAATTGGTCAAGTAGCCACCGGTGCTCAT 3562 Query 9895 TACAAATTAAGGGGAATATT----GGCAACAATCCGACCAGTTCGAGATTTCATATGTGG 9950 |||||| | | | || | || ||| |||| ||||||| || || || || Sbjct 3561 TACAAACTTCGTTGTTTACTACACGGGTACAGTCCG----GTTCGAGGGTTTATCTGCGG 3506 Query 9951 AGGAGACGGATCTGGTGGAATGACGGCTGCGATACTACGATACTATCCAAAAGCTCGAGG 10010 ||||| || || || |||||||| |||| | || || | ||||||| ||||| || Sbjct 3505 TGGAGATGGTTCAGGAGGAATGACATCTGCACTTCTCCGCTTGTATCCAACAGCTCTGGG 3446 Query 10011 TATTTTCAATAGCCTGATG 10029 || ||||| ||||||||| Sbjct 3445 CATCTTCAACAGCCTGATG 3427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37268436478160