Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= NC_033731.1 Length=12548 Score E Sequences producing significant alignments: (Bits) Value seq283927 105 5e-19 >seq283927 Length=152763 Score = 105 bits (116), Expect = 5e-19 Identities = 169/240 (70%), Gaps = 11/240 (5%) Strand=Plus/Minus Query 6371 ACAATGGCAGACGACTTGAATGATGTCATAAGTAAAATGTTGTCTAG----TACATCAGG 6426 || |||||||||||||||| || ||| || ||| ||||| ||| | || | || Sbjct 1519 ACCATGGCAGACGACTTGATGGAAGTCGCAA---AAAAGTTGT-TAGACAATTCACCGGG 1464 Query 6427 ACAAGGGTTGGATGACTACTCAGTAGTATCTATTTCTAACCACTTAGATTACGAGAAATG 6486 ||||||| ||| || ||| | | | | ||| | ||||| | |||||||| ||||| Sbjct 1463 ACAAGGGCAGGACGATTACCAATTGATTACCATTGCCAACCATATCGATTACGAAAAATG 1404 Query 6487 GAACAATCACCAAAGGAAGGAATCAAATGATCCTGTATTCAGAGTGATGGGTCAATTTTT 6546 ||| ||||||||||| || | || | || || ||||| |||||||| ||||| || Sbjct 1403 GAATAATCACCAAAG---AGATGCTAACAACCCGGTGTTCAGCGTGATGGGGCAATTCTT 1347 Query 6547 GGGAAAGCCTAACTTATTCACTAGGACACATGAGTTTTTCGAGAAATCGTTGATTTATTA 6606 |||| ||| ||||| || ||| | || || | || || || || || |||||||| Sbjct 1346 GGGACTGCCAAACTTGTTAACTCGCACCCACAAATTCTTTGAAAACAGTTTAATTTATTA 1287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39871968979456