Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ladona_20fulva_20[genbank_20GCA_5F000376725.1_202013-04-23] 10,166 sequences; 1,158,111,285 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq5093 217 2e-54 seq203 118 2e-24 seq6193 93.3 7e-17 seq4126 73.4 6e-11 >seq5093 Length=776812 Score = 217 bits (240), Expect = 2e-54 Identities = 203/255 (80%), Gaps = 10/255 (4%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 20771 TCCTTCAGTTTAGCGCACGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 20712 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACC----AAC 127 | |||| || | | || | | | || ||||||||||| | || || Sbjct 20711 C-TCAATCT-CGTGCGACTAGGGGTCGCCTGTTCCTCTAAGAAGAAATGGACGTTGGAAG 20654 Query 128 CATAGTCGATGG----GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183 |||| | ||| | ||| |||||||| | ||||||||||||||||||||||||| Sbjct 20653 CATAATAGATTCCAACGCCTAGTTAGCAGGCCAGAGTCTCGTTCGTTATCGGAATTAACC 20594 Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 20593 AGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAG 20534 Query 244 AGCTATCAATCTGTC 258 |||| | | | |||| Sbjct 20533 AGCTCTTATTTTGTC 20519 Score = 109 bits (120), Expect = 9e-22 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 ||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 29399 ACCTGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGA 29340 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| | | |||||| Sbjct 29339 AAGAGCTCTTATTCTGTC 29322 Score = 104 bits (114), Expect = 4e-20 Identities = 62/64 (97%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 9906 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCA 9848 Query 77 AACT 80 | || Sbjct 9847 ATCT 9844 >seq203 Length=374090 Score = 118 bits (130), Expect = 2e-24 Identities = 165/227 (73%), Gaps = 12/227 (5%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||| Sbjct 314463 TCCTTCAGTGTAGCGCGAGTGCGGCTCAGAAAATCTAAGGGCATCACATACCTGTTATTG 314404 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA----CCAAC 127 ||| || ||| | || | | | ||||| || ||||| | | || Sbjct 314403 -CTC-AATTTCGTACGACTAGGGGTCGCATGTCCCCCTTAGAAGAAATGGATGTTGGAAG 314346 Query 128 CAT-----AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAAC 182 ||| | || | | ||| ||| || || | ||||| |||||| ||||||||||| Sbjct 314345 CATGATAAACTCCA-ATGACTAGTTAACAAGTCAGAGTCTCTTTCGTTGTCGGAATTAAC 314287 Query 183 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 |||| ||||| ||||| || ||||||| |||||||||||||| || Sbjct 314286 CAGAAAAATCGCTCCATAAATGAAGAACGACCATGCACCACCACTCA 314240 >seq6193 Length=594026 Score = 93.3 bits (102), Expect = 7e-17 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| Sbjct 128112 TCCTTCAGTGTAGCGCGCGGGCGGCCCGGAACATCTAAGGGCATCGCAGACCTGTTATTG 128171 Query 72 C 72 | Sbjct 128172 C 128172 >seq4126 Length=1170649 Score = 73.4 bits (80), Expect = 6e-11 Identities = 60/73 (82%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 ||||||| ||||||||||||||||||||| ||| || |||||| | ||| |||||||| Sbjct 496388 ACAAATCTCTCCACCAACTAAGAACGGCCGTGCGCCGTCACCCACCGTATCTAGAAAGAG 496329 Query 246 CTATCAATCTGTC 258 || | |||||| Sbjct 496328 CTCTTTTTCTGTC 496316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796721528646