Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq4790 214 3e-53 seq6924 181 2e-43 >seq4790 Length=10904 Score = 214 bits (236), Expect = 3e-53 Identities = 208/258 (81%), Gaps = 11/258 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 777 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 834 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| | ||||| | ||||| | | ||||| | || Sbjct 835 CTCGTTCATGGGGAATAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 894 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || | || || ||| | | ||||||||||||||||||| Sbjct 895 ACCCGGGCCTTTCGGCCAGGGAAA---ACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 951 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||||||| ||||||||||||||||||| ||||| || |||| | ||| | Sbjct 952 GCCCAGAACATCTAAGGCCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 1008 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 1009 AGCCGCCTGTCCCTCTAA 1026 >seq6924 Length=2357 Score = 181 bits (200), Expect = 2e-43 Identities = 169/210 (80%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 205 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 148 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| ||||| | ||||| | | ||||| | || Sbjct 147 CTCGTTCATGGGGAATAATTGCAAGCCCGAATCCCTAGCACGAAGGAGGTTCAACGGGTT 88 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || | | || ||| | | | |||||||||||||||| Sbjct 87 ACCCGGGCCTTTCGGCCAGGGAAA---ATACGCTGATTCCTTTCGTGTAGCGCGCGTGCG 31 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCT 209 |||||||||||||||||||||||||||||| Sbjct 30 GCCCAGAACATCTAAGGGCATCACAGACCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751908216285