Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4790 421 2e-115 seq9119 161 3e-37 seq11899 105 2e-20 >seq4790 Length=10904 Score = 421 bits (466), Expect = 2e-115 Identities = 428/547 (78%), Gaps = 53/547 (10%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| | || | | ||| || ||||| ||||| | ||||||||| Sbjct 1977 GTACTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATTTTTCGTCACTACC 2036 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2037 TCCCCGTGCCGGGAGTGGGTAATTGGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 2096 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 2097 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 2156 Query 180 AGGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG- 237 |||| || || |||||||||| |||||||| |||||| ||||||| || | |||||| Sbjct 2157 AGGCGCAGAAT-CTACCATCGACAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGG 2215 Query 238 -GCT-CAAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAAGGAGC-CCCGAAGG 292 ||| ||| ||||||||| | |||||||| || ||||||| ||| ||| || Sbjct 2216 TGCTAGAAGACCATGCGATCAGCACAAAGTTATTCAGAGTCACCAA--AGCAAACGATGG 2273 Query 293 GCG---------------------TTGGTTTTTTATCTAATAAA--------TA-CACCC 322 || |||| |||| |||||||||| || || | Sbjct 2274 ACGAACGTTACCGCCCGCCACCGATTGG-TTTTGATCTAATAAAAGCGTTCCTACCATCT 2332 Query 323 CT--TCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG 380 || || ||| || | ||| |||||||||||||||||||||||||| |||||||| | Sbjct 2333 CTGGTCGGAACTC----TGTTTTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAG 2388 Query 381 TA---GTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437 || || ||||| ||| || |||| ||||||||||||||||||||||||| ||||||| Sbjct 2389 TAAATGT-TGGTACGATCTAAGAAACCATAACTGATTTAATGAGCCATTCGCGGTTTCAC 2447 Query 438 TGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTA 497 || | || | |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2448 CTTA-ATGCGGCATGTACTGAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTA 2506 Query 498 CTGGCAG 504 ||||||| Sbjct 2507 CTGGCAG 2513 Score = 113 bits (124), Expect = 1e-22 Identities = 100/124 (81%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||| | |||| ||||| | || | | ||| | ||||| ||||| ||||||| | Sbjct 10781 GTACCCCTTCCGATTACGGGGCCTCGGATGAGTTCAGTATCGTTATTTTACGTCACTATC 10840 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||||| || || | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 10841 TCCCCGTACCGAGAGTAGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 10900 Query 120 TTCT 123 |||| Sbjct 10901 TTCT 10904 >seq9119 Length=960 Score = 161 bits (178), Expect = 3e-37 Identities = 126/148 (85%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACCCAAAA-GAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||| ||||| | || | ||| || || | ||||| | |||||||||| Sbjct 577 TACTCATTCCGATTACGGGGCCTTGGATGAGTCCCGTCCCGTTATTTTTCGTCACTACCT 636 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 637 CCCCGTACCGGGAGTGGGTAATT-GCGCGCCTGCTGTCTTCCTTGGATGTGGTAGCCGTT 695 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACC 148 |||||||||||||||||||||||||||| Sbjct 696 TCTCAGGCTCCCTCTCCGGAATCGAACC 723 >seq11899 Length=527 Score = 105 bits (116), Expect = 2e-20 Identities = 82/96 (85%), Gaps = 4/96 (4%) Strand=Plus/Plus Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 ||||||||||||||||||||| ||||||| || | || | |||| ||||||||||| Sbjct 1 CTGATTTAATGAGCCATTCGCGGTTTCACCTTAATGCG-GCATCTACTGAGACATGCATG 59 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||| |||||||||||||||| Sbjct 60 GCTTAATCTTTGAGACA---ATATGACTACTGGCAG 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510209704704