Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq4180 80.6 8e-11 >seq4180 Length=200090 Score = 80.6 bits (88), Expect = 8e-11 Identities = 159/228 (70%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 2689 CTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCG 2748 ||| | || || || ||||| ||||| | || || || || ||||| | ||||||| Sbjct 133693 CTTTTGAAGGTCAATCAAATAGGTACCGTTACAGAGTCTATTAACGCTCACAAAATGGCC 133752 Query 2749 AAAGAAGCTGGATACA-CAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAAC 2807 || | || || | || || | || || || ||||| |||||||| ||||| | Sbjct 133753 AAGGCTGCCGGTTGGGGCACCA-TGGTGTCTCATCGTTCCGGTGAAACGGAAGACACGTT 133811 Query 2808 AATCGCTGATATTGCAGTTGCAACTAACG-CTGGTCAAATTAAGACAGGTTCA--TTGTC 2864 ||||| ||| | | ||||| | || || | || ||||||||||| || || |||| Sbjct 133812 TATCGCCGATTTAGTAGTTGGA-CTTTCGACCGGCCAAATTAAGACCGGCGCACCTTGT- 133869 Query 2865 ACGTACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 ||| | || ||| | || || |||||||| | |||||||||||||| Sbjct 133870 -CGTTCGGAACGTTTGGCCAAGTACAACCAGATTCTTCGTATCGAAGA 133916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156015054607356