Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_025741.1 Length=2197 Score E Sequences producing significant alignments: (Bits) Value seq3407 183 4e-43 >seq3407 Length=1101 Score = 183 bits (202), Expect = 4e-43 Identities = 220/299 (74%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 1845 CGCTCGGCCGAGATAACCCTCCCGCGACCACATCTCCATCTTTGATCGCATAGTCGAAAC 1904 |||| ||||| | | ||||| ||||| | | |||||| ||||| || || ||| ||| Sbjct 543 CGCTTGGCCGTGCGAGACCTCCTGCGACAATGTTTCCATCCTTGATTGCGTAATCGTAAC 602 Query 1905 CGCCTTCCGGGCTTCCGTAAGATGGAACAAGGTTCGGGTGGCGGCCTCCAACATCAAACA 1964 | | |||||| ||||| ||||| |||| |||||||||| |||| |||||||||| | Sbjct 603 CACGTTCCGGACTTCCTCGTGATGGTACAACGTTCGGGTGGTGGCCGTCAACATCAAAGA 662 Query 1965 CATCGGATCGTCTGGATCGAAACCTCCGGGAGAAATCGACGAAAGCATGGAGATGAGTAC 2024 ||||| ||| | | | ||| || | ||||||| |||||||||||||||||||| Sbjct 663 TATCGGCTCGACGGCTCCTGAACTTCTTGCCGAAATCGCAGAAAGCATGGAGATGAGTAC 722 Query 2025 CTCCATCAGCATGCAGTTCTCGTCCAATGATACACTCAGCACCAAGAAATGCCATATGGT 2084 ||||| ||| ||| ||||| |||||||| ||||| | || || | | ||||| Sbjct 723 CTCCAGCAGAATGATCCTCTCGCCCAATGATGCACTCTGATCCCAGTGTAGAGAGATGGT 782 Query 2085 CATTAACGGCCCATGCATCAAGATCGCCGCATTGCGCGTAGGTAAGGAGGGCATAACGA 2143 ||||| |||| ||||||| || ||||| ||||| || || ||||| |||| ||| Sbjct 783 TTGAAACGGACCATTCATCAAGTTCACCGCACTGCGCATATGTGAGGAGTACATACCGA 841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6920673444342