Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_030143.1 Length=2240 Score E Sequences producing significant alignments: (Bits) Value seq3407 178 2e-41 >seq3407 Length=1101 Score = 178 bits (196), Expect = 2e-41 Identities = 221/299 (74%), Gaps = 8/299 (3%) Strand=Plus/Plus Query 1899 GGCCTTGGAAGCCCCCCTGCAACAACGTTTCCGTCTTTGACCGCATAATCCCAACCTTCT 1958 |||| || || || ||||| |||| |||||| || |||| || ||||| |||| | Sbjct 548 GGCCGTGCGAGACCTCCTGCGACAATGTTTCCATCCTTGATTGCGTAATCGTAACCACGT 607 Query 1959 CCCGCACGACCTCGAGATGGCACAACGTTCGGGTGCTTGCCTCCGACATCaaaaaaaCCG 2018 ||| || ||||| ||||| |||||||||||||| | ||| | |||||||| | | || Sbjct 608 TCCGGACTTCCTCGTGATGGTACAACGTTCGGGTGGTGGCCGTCAACATCAAAGATATCG 667 Query 2019 GATCGTCTGGAT--TG--CTTCTTGTGTCCAAAATCGACGAAAACATGGAGATGAGTACC 2074 | ||| | || | || ||||||| || |||||| |||| |||||||||||||||| Sbjct 668 GCTCGAC-GGCTCCTGAACTTCTTG---CCGAAATCGCAGAAAGCATGGAGATGAGTACC 723 Query 2075 TCCATCAGCGTGATCCTCTCGTCCAATGATACACTCCGCTCCAAGAGACGAAATATGGTC 2134 |||| ||| ||||||||||| |||||||| ||||| | ||| || | || | ||||| Sbjct 724 TCCAGCAGAATGATCCTCTCGCCCAATGATGCACTCTGATCCCAGTGTAGAGAGATGGTT 783 Query 2135 GAGAACGTCCCACTCATCGAGCGTGCCGCATTGAGAGTAGGTGAGGAGGACATAACGAG 2193 |||| ||| ||||| || ||||| || | || |||||||| ||||| |||| Sbjct 784 TGAAACGGACCATTCATCAAGTTCACCGCACTGCGCATATGTGAGGAGTACATACCGAG 842 Score = 96.9 bits (106), Expect = 5e-17 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1328 AATCCCACCCCTCAAATCATCAAACACCGCATACTGCGCGTCAGGCATATCGCGCAGCAA 1387 ||| ||||| | || |||||| || | ||||| |||||||| |||||||||||| Sbjct 11 AATACCACCTCGCATATCATCCAATATTGCATAATGCGCGTCCTGCATATCGCGCAAAGC 70 Query 1388 CACGGCACCACTCAACATTCCCATGATGTATACGTGGCTGCCGAGTGATCTAGACCACAG 1447 ||| | ||||||| || ||||||| ||| |||| ||| |||||||| | |||| Sbjct 71 CACCTCGCCACTCATGATACCCATGAAGTAAGCGTGAGGGCCAAGTGATCTTGCCCACGT 130 Query 1448 TGTCTTTCCCAATCTGGAAGGTCCATACAATACCAAGGACT 1488 || ||||| | || || |||||||| | ||||| |||| Sbjct 131 GGTTTTTCCGACTCGTGAGGGTCCATAAATGACCAAAGACT 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7058255024604