Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_033736.1 Length=2208 Score E Sequences producing significant alignments: (Bits) Value seq3407 311 1e-81 >seq3407 Length=1101 Score = 311 bits (344), Expect = 1e-81 Identities = 420/581 (72%), Gaps = 13/581 (2%) Strand=Plus/Plus Query 1631 CTCCCCATGCAGCCAGGTCAGGTACCATTCCAAGCTCAAAATTGAGCCCGGCGGGATGCT 1690 ||| |||||||| ||| ||| ||| |||| |||||| ||| |||||||||| Sbjct 312 CTCTCCATGCAGGCAGCTCATGTAGATCTCCATATTCAAAACTGATCCCGGCGGGACTGA 371 Query 1691 CGTACCTCTCAGG-CTCGACCCTGTAC--CTCCAATCGGCGAATTTTCGGAGGTTTCCGT 1747 |||| | || || || | ||| | | ||| || ||| || |||||| | | Sbjct 372 CGTAGATTTCCGGACTAG---CTGCAAAGCGCCAGTCACAGAACTTCTTGAGGTTGCTGA 428 Query 1748 AGTTGGTACAAAGTGCTTTTGGATCCAGTCGCTCAACAGCTTCCCAAAATAGTTGCTCAC 1807 ||||||| |||||| |||||||||||| | |||||| |||||| | ||||| Sbjct 429 AGTTGGTGGCAAGTGCCTTTGGATCCAGTTGTTCAACAAGACTCCAAAACTCTGACTCAC 488 Query 1808 TCTCAGCTCCGACGATCTCGCTCCACTTATCGCCATTCGACACAGCTCCATTGACGCTTG 1867 ||||||| | ||| |||| || ||| ||||||||||| |||||||||| | |||||| Sbjct 489 TCTCAGCGCTGACAATCTGGCCCCATTTATCGCCATTTGACACAGCTCGACACTCGCTTG 548 Query 1868 GCCGTGCGAGCCCTCCTGCAACAACGTCTCCATCCTTGATCGCGTAGTCGTAACCACCTT 1927 |||||||||| |||||||| |||| || |||||||||||| ||||| |||||||||| || Sbjct 549 GCCGTGCGAGACCTCCTGCGACAATGTTTCCATCCTTGATTGCGTAATCGTAACCACGTT 608 Query 1928 CTGGCTTTCCTTTAGATGGTGCAATGTTCGCGTGGCGGCCGTCCACATCAAACTTCCGTG 1987 | || ||||| |||||| ||| ||||| |||| ||||||| |||||||| | | Sbjct 609 CCGGACTTCCTCGTGATGGTACAACGTTCGGGTGGTGGCCGTCAACATCAAAGATATCGG 668 Query 1988 CGTTGCGGGATCGGAACTTGCGGCCGAAATCGACGAAAGCATGGAGATGAGTACCCTCAT 2047 | ||| | |||||| |||||||||| ||||||||||||||||||||| || Sbjct 669 CTCGACGGCTCCTGAACTTCTTGCCGAAATCGCAGAAAGCATGGAGATGAGTACCTCCAG 728 Query 2048 CAGCGTGACTCTCTCTTGCAACGATGCACTCTGCTCCAAGAGATGCAAAATGGTCGTTAA 2107 ||| ||| ||||| ||| ||||||||||| ||| || | | | ||||| || Sbjct 729 CAGAATGATCCTCTCGCCCAATGATGCACTCTGATCCCAGTGTAGAGAGATGGTTTGAAA 788 Query 2108 CGGCCCATGGATCAAGGTCGCCGCACTGGGCGTAAGTGACAAGAAAGTACCGGGCATTGT 2167 ||| |||| |||||| || |||||||| || || |||| || | ||||| | ||| Sbjct 789 CGGACCATTCATCAAGTTCACCGCACTGCGCATATGTGAGGAGTACATACCGAGAGTTGA 848 Query 2168 AGGTGAAAGGAGGCA------TGTGTCCCAAGTG-TCCTGG 2201 | || | ||||| ||||||| ||||| |||||| Sbjct 849 TGACAAATGCAGGCATTAGCGTGTGTCCGAAGTGTTCCTGG 889 Score = 93.3 bits (102), Expect = 6e-16 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 1285 AAAAACTTAATTCCACCCCTCATATCATCGAATACGGCATATTCCGCGTCTGGCATATCG 1344 ||||| |||| ||||| | ||||||||| |||| ||||| | |||||| |||||||| Sbjct 3 AAAAAGCTAATACCACCTCGCATATCATCCAATATTGCATAATGCGCGTCCTGCATATCG 62 Query 1345 CGCAACGCTACTTCACCGGACATCAGCCCCATGAAGTAGACGTGGTTGCCTAGACTTCGG 1404 ||||| || || || || ||| | ||||||||||| |||| ||| || || Sbjct 63 CGCAAAGCCACCTCGCCACTCATGATACCCATGAAGTAAGCGTGAGGGCCAAGTGATCTT 122 Query 1405 GCCCAAGTGGTCTTACCCACTTTGGTTGGTCCATACA-GACACAAAGA 1451 ||||| ||||| || || ||| | |||||||| | ||| |||||| Sbjct 123 GCCCACGTGGTTTTTCCGACTCGTGAGGGTCCATAAATGAC-CAAAGA 169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6955868732316