Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq23980 188 1e-45 seq609 109 8e-22 seq972 107 3e-21 seq11581 104 4e-20 seq8839 73.4 6e-11 >seq23980 Length=1355 Score = 188 bits (208), Expect = 1e-45 Identities = 192/241 (80%), Gaps = 11/241 (5%) Strand=Plus/Minus Query 18 GTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACA 77 ||| ||||||||||||| |||||||||||||||| |||||| ||||||| | | |||| Sbjct 1355 GTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-CCTCGTTCATGGGGAACA 1298 Query 78 ATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCC 136 ||||||| | ||||| | ||||| | | |||| | |||||||| ||| |||||| Sbjct 1297 ATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTTACCCGGGCCTTTCGGCC 1238 Query 137 AAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG 196 | || | || || ||| | | |||||||||||||||||||||||||||||||||||| Sbjct 1237 AGGGA---ACACACGCTGATTCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG 1181 Query 197 GCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAAAGGC-CATCTCCCTCGA 254 |||||||||||||||||||| ||||| || |||| | ||| ||| | | | |||||| | Sbjct 1180 GCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGAAGCCGCCTGTCCCTCTA 1124 Query 255 A 255 | Sbjct 1123 A 1123 >seq609 Length=44856 Score = 109 bits (120), Expect = 8e-22 Identities = 143/194 (74%), Gaps = 12/194 (6%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 ||||||||||||||||||| ||||||||||||| ||||||||| ||| | |||| |||| Sbjct 44580 TACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCATTTAGTGGGAA-TTCC 44637 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATTA 120 | ||| | | ||||||||||| | ||| | ||||| | | |||| | ||| Sbjct 44638 TTGTTCATGGGGAACAATTGCAAGCCCCAATCTATAGCACGAAGGAGGTTCAGCGGGTTA 44697 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 |||| ||| ||||||| || | || || ||| | | |||||||||| |||| Sbjct 44698 CCCGAGCCTTTCGGCCA---GGAAACACACGCTGATTCCTTCAGTGTAGC------GCGG 44748 Query 181 CCCAGAACATCTAA 194 |||| ||||||||| Sbjct 44749 CCCAAAACATCTAA 44762 >seq972 Length=36855 Score = 107 bits (118), Expect = 3e-21 Identities = 87/103 (84%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||| Sbjct 16252 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAA-TTC 16309 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 ||||| | | ||||||||||| || ||||| | ||||| Sbjct 16310 TTCGTTCATGGGGAACAATTGCAAGCCTCAATCCCTAGCACGA 16352 >seq11581 Length=4998 Score = 104 bits (114), Expect = 4e-20 Identities = 75/84 (89%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||| Sbjct 4905 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAA-TTC 4962 Query 61 CTCGTTGAAGACCAACAATTGCAA 84 |||||| | | ||||||||||| Sbjct 4963 CTCGTTCATGGGGAACAATTGCAA 4986 >seq8839 Length=7069 Score = 73.4 bits (80), Expect = 6e-11 Identities = 58/67 (87%), Gaps = 2/67 (3%) Strand=Plus/Plus Query 18 GTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACA 77 ||| ||||||||||||| |||||||||||||||| |||| ||||||||| | | |||| Sbjct 6993 GTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAA-TTCCTCGTTCATGGGGAACA 7050 Query 78 ATTGCAA 84 ||||||| Sbjct 7051 ATTGCAA 7057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751731882860