Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq19747 700 0.0 seq18123 136 2e-29 seq20862 120 1e-24 seq10104 105 3e-20 seq12837 100 1e-18 >seq19747 Length=2046 Score = 700 bits (776), Expect = 0.0 Identities = 560/667 (84%), Gaps = 13/667 (2%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| ||||||| |||||||||||||| |||||||||||| |||||||| |||||||| || Sbjct 281 TGTAAAGCTCCCTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCTAAACGGGAGGTATAT 340 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 341 GTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 400 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 401 TGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTC 460 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGC-CCCTCGGCCGGTGCACTCTTCTGCGG 261 | |||||||||| | | | | ||| ||||| ||| |||||||||||| | | | Sbjct 461 GAGACCAGACTTGGGCCCGGGGGATCACCCGGCGTTCTC-GCCGGTGCACTCCGCCGGGC 519 Query 262 TCAGGCCAGCATCAGCTCG-GGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGG 320 |||||||||||||| ||| |||| ||| |||||| ||||||| ||||| ||| ||| Sbjct 520 CCAGGCCAGCATCAGTTCGCCGCGG-GGGACAAAGGCGCCGGGAACGTGGCTCCCCGCGG 578 Query 321 GGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTA 380 || |||||||||||||| | | |||| | ||| ||||||||| |||||||| || | Sbjct 579 GGAGTGTTATAGCCCGGCGCGCCATGCCCCGCGCGCGGACTGAGGCGCGCGCTCC-GCAA 637 Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 |||||||||||||||||| |||| ||||||||| |||||||||||||||||| | Sbjct 638 GGATGCTGGCGTAATGGTCCCCAGCGACCCGTCTTGAAACACGGACCAAGGAGTCGTCCT 697 Query 441 TCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAA 500 |||||||||||| ||| ||||||||| | |||||||||||||||| || ||||| || Sbjct 698 CGTATGCGAGTGTTCGGGCGTCAAACCCCTACGCGTAATGAAAGTGAGCGCAGGTGAGAG 757 Query 501 CCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTT----CGGATGGATTTGAGTAAGA 556 || || |||||| |||||||||| |||| | | |||| ||||||||||| || Sbjct 758 CC----TCGGCGCACCACCGACCGATCCCGATGGCCTCGCCCGGACGGATTTGAGTAGGA 813 Query 557 GCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGA 616 ||||| | |||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 814 GCATACGGGGCCGGACCCGAAAGAAGGTGAACTATGCCTGTATAGGGTGAAGCCAGAGGA 873 Query 617 AACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATA 676 ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| || Sbjct 874 AACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCGAATATGGGCATG 933 Query 677 GGGGCGA 683 ||||||| Sbjct 934 GGGGCGA 940 >seq18123 Length=2424 Score = 136 bits (150), Expect = 2e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 978 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 919 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | ||||| Sbjct 918 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 859 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 858 ATAGGGGCGA 849 Score = 136 bits (150), Expect = 2e-29 Identities = 118/144 (82%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || ||||||||||| |||| |||||| | | ||||| ||||||| Sbjct 1820 GAGTCGGGTTGCTTGAGAGTGCAGCTCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 1761 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | | ||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 1760 AC-GACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 1702 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 1701 GAGAGAGTTCAAGAGTACGTGAAA 1678 Score = 77.0 bits (84), Expect = 1e-11 Identities = 70/87 (80%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG---TGTC-- 462 ||||||||| |||||||||||||||||||||||| || |||||| ||||| |||| Sbjct 1164 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTACGCGAGTCATTGGGACTTGTCGC 1105 Query 463 -AAACCCGTGCGCGTAATGAAAGTGAA 488 | ||| |||||||||||||||| Sbjct 1104 GAGACCTAAAGGCGTAATGAAAGTGAA 1078 >seq20862 Length=1818 Score = 120 bits (132), Expect = 1e-24 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| |||||| Sbjct 274 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAAT 215 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 214 ATAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAAT 155 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 ||||||||||| || |||||||| || | | ||| Sbjct 154 AGAGAGTTAAACAGTACGTGAAACTGCTTAGAGG 121 >seq10104 Length=5961 Score = 105 bits (116), Expect = 3e-20 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| || ||| Sbjct 2435 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACAAAATCAGG 2376 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| ||||||||||||| ||| | || || Sbjct 2375 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATTGTCGGAACTGTGT 2316 Query 674 ATA 676 ||| Sbjct 2315 ATA 2313 >seq12837 Length=4330 Score = 100 bits (110), Expect = 1e-18 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||| ||| |||| ||| |||||| ||| |||||| || |||| Sbjct 2463 TGGTGAACTATGCCTTGTCAGGACGAAGTCAGGGGAAACCCTGATGGAGGTCCGTAGCGA 2404 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||||||||||||||||| | ||||||||||||||| Sbjct 2403 TTCTGACGTGCAAATCGATCGTCGGAACTGGGTATAGGGGCGA 2361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079210554200