Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq23980 199 7e-49 seq972 113 9e-23 seq609 107 4e-21 seq11581 104 4e-20 seq8839 75.2 2e-11 >seq23980 Length=1355 Score = 199 bits (220), Expect = 7e-49 Identities = 192/242 (79%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 1119 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 1176 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| || || || || Sbjct 1177 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGT---GTT 1233 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||| | |||||| | | || ||| ||||||| ||||| | | ||| Sbjct 1234 CCCTGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 1293 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 1294 CAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 1353 Query 311 AC 312 || Sbjct 1354 AC 1355 >seq972 Length=36855 Score = 113 bits (124), Expect = 9e-23 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||||| ||||| ||| |||||||| || | | | ||||| |||| || ||||||||| Sbjct 16352 TCGTGCTAGGGATTGAGGCTTGCAATTGTTCCCCATGAACGAAGAATTCCCAGTAAGCGC 16293 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| |||||||||||||||||||||||||||| Sbjct 16292 GAGTCATAAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 16253 >seq609 Length=44856 Score = 107 bits (118), Expect = 4e-21 Identities = 139/192 (72%), Gaps = 9/192 (5%) Strand=Plus/Minus Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 ||||||||| |||||||| |||||||||| || || || || || ||| Sbjct 44762 TTAGATGTTTTGGGCCGC------GCTACACTGAAGGAATCAGCGTGTGTTTCC---TGG 44712 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| |||| |||||| | | || ||| ||||||| ||| | | |||||||| Sbjct 44711 CCGAAAGGCTCGGGTAACCCGCTGAACCTCCTTCGTGCTATAGATTGGGGCTTGCAATTG 44652 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 || | | | ||| |||||| || | ||| ||| ||||| ||| |||||||||||||||| Sbjct 44651 TTCCCCATGAACAAGGAATTCCCACTAAATGCGAGTCATAAGCTCGCGTTGATTACGTCC 44592 Query 317 CTGCCCTTTGTA 328 |||||||||||| Sbjct 44591 CTGCCCTTTGTA 44580 >seq11581 Length=4998 Score = 104 bits (114), Expect = 4e-20 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 237 GGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATC 296 ||||| | | |||||||| || | | | |||||||||| || |||||||||| ||||| Sbjct 4997 GGGATTGGGGCTTGCAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATA 4938 Query 297 AGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| |||||||||||||||||||||||||||| Sbjct 4937 AGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 4906 >seq8839 Length=7069 Score = 75.2 bits (82), Expect = 2e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 237 GGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATC 296 ||||| | | |||||||| || | | | |||||||||| || |||||||||| ||||| Sbjct 7068 GGGATTGGGGCTTGCAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATA 7009 Query 297 AGCACGCGTTGATTAC 312 ||| |||||||||||| Sbjct 7008 AGCTCGCGTTGATTAC 6993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946851392512