Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq532 125 6e-24 >seq532 Length=46805 Score = 125 bits (138), Expect = 6e-24 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 ||||| |||||||||||||| ||||| || || ||||| ||||||||| | | || | Sbjct 27760 CATGTCTTGGCGTTCTTTGCTGCTTCCGATGGAATCGTTAATGAGAATCTGATTGAGAGA 27819 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| || |||||| || | |||| || ||||||||||||||||||||||| ||||| Sbjct 27820 TTCAGTCAAGAGGTGAAAATCGCGGAAGCACGTTGTTTCTACGGCTTCCAGATCGCCATA 27879 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 || ||| | || || |||||||| | |||||||| || || || Sbjct 27880 GAAAATATTCATTCTGAGATGTATTCCTTACTCATCGAAACTTATAT 27926 Score = 122 bits (134), Expect = 7e-23 Identities = 165/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 61396 TTGTTCAATGCCATCGAGACGATACCG-GCG-GTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 ||||| ||||| || |||||| | || ||| | ||| ||| || ||||||| || | Sbjct 28238 TTGTTTAATGCAATTGAGACGCTTCCTTGCGTGGGAAA--GAAGGCCAATTGGGCATTAA 28295 Query 61454 ATTGGATCAC-CAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 | ||||||| || ||| || |||||||| ||| || | | || || |||| |||| Sbjct 28296 ACTGGATCAATCACGACAGCG-CTACATTTCCTGAGCGTGTAGTTGCGTTCGCGGCGGTC 28354 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 || ||| | || |||||||| || || ||||||| ||| |||||||||| ||| | Sbjct 28355 GAAGGTATCTTCTTCAGTGGCAGTTTCGCTTCAATCTTCTGGCTGAAGAAACGAGGAGTC 28414 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGA 61616 ||||| ||||| ||||||||||| || | || ||||| ||||| Sbjct 28415 ATGCCAGGTCTCACCTTCAGCAACGAACTCATCTCACGAGACGA 28458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397389671370560