Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq13651 147 8e-31 >seq13651 Length=3921 Score = 147 bits (162), Expect = 8e-31 Identities = 206/288 (72%), Gaps = 1/288 (0%) Strand=Plus/Minus Query 24775 AAGGCGCTGGCATGGGTGGAGAAAAACATCAGAGTGCCGCTGACCGAACCCCAGAAAGCG 24834 ||||| || | ||||| || ||| ||| || ||||||||||||| || |||| Sbjct 3297 AAGGCTCTCGACTGGGTAGACCGCAACGTCAAGGTAACGCTGACCGAACCTCAAAAAGTT 3238 Query 24835 GGGATCGCGTCATTCTGTCCGTACAACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTT 24894 || ||||| ||||||||||||| ||||| ||||| || || || ||| | || || ||| Sbjct 3237 GGTATCGCCTCATTCTGTCCGTGGAACATCGGCCCTGGAAAATGCTTCACCTCCACCTTT 3178 Query 24895 TACAGACGGATTAATGCAGGAGATCGAAAAGGTGCCTGCGAAGCGATTCGCTGGTGGATT 24954 |||| | | || || || || || | ||||||||| || || ||| | ||||| Sbjct 3177 TACAAGAAGCTGAACGCCGGCGACCGCATTGGTGCCTGCCGAGAAATCCGCCGCTGGATA 3118 Query 24955 AAGGACGGTGGCAGGGACTGCCGTATTCGCTCAAATAACTGTTACGGTCAGGTATCCCGT 25014 | |||| |||| | || ||||| || ||||| |||||||| ||||| ||| | || Sbjct 3117 TACGACGCTGGCCGAGATTGCCGCATCCGCTCGAATAACTGCTACGGGCAGATCGTACGG 3058 Query 25015 CGTGACCAGGAGAGCGCGCTGGCGTGCTGGGGAATCGACAGAT-AAGC 25061 || || ||||| || || || ||||||||| | |||| || |||| Sbjct 3057 CGCGATCAGGAAGCCGAACTAGCTTGCTGGGGATTGGACAAATGAAGC 3010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175468878234384