Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_033328.1 Length=3958 Score E Sequences producing significant alignments: (Bits) Value seq10770 212 2e-51 seq8154 161 2e-36 >seq10770 Length=5514 Score = 212 bits (234), Expect = 2e-51 Identities = 489/721 (68%), Gaps = 23/721 (3%) Strand=Plus/Minus Query 2895 CTCATTGGGATCCAGATGAAATGCTACGAACTTACCCACCAACTGAAGTACAAATAGAGA 2954 |||| |||||| | |||||| | | || ||| || ||||||| | |||||| | || Sbjct 1427 CTCACTGGGATAATGCTGAAATCCCTCCAAATTATCCTCCAACTGCTGAACAAATCGGGA 1368 Query 2955 CAATGACCTTTCCTCAAGCATGGTTCTATGCTTATTA-TATATCTAAGCATCTAAGATCT 3013 | || ||||| |||||| || || ||| || | || ||| || | | Sbjct 1367 ATTTAACATTTCCAGAAGCATTCTTGTACTGTTACTACTTTACGCAAGGG-CTTCGTGTT 1309 Query 3014 CCTAATCGACAATTAGCCTTGGAGTATATAACTCACGCTTATTGTGCCTTGGGAAAGAGA 3073 || |||||| || || | | || || || | || |||||||| || | || | Sbjct 1308 CCAGCTCGACATTTCGCTATCGGGTTCATCCCTAATGCCTATTGTGCTCTGAGTAAACGT 1249 Query 3074 GGACAAGTCACTGATGAATTTTGTACGAAAATTACAAATGCGGTCCGAGATGAGTTGGGA 3133 || ||||| || | |||||||| | || || | || || |||| || || ||| Sbjct 1248 GGTCAAGTGACAGTCGAATTTTGCAATAAGATCAATGCAGCAGTTAGAGACGAATTAGGA 1189 Query 3134 GTAAATGT-AGTATTACATTCAGGTACCTTAAATTCATTATACAAGAGCTATATGCAAGG 3192 || ||| | | || |||||||||||| | ||| || | || ||| | || ||||| || Sbjct 1188 GTGGTTGTTAATCTT-CATTCAGGTACCCTGAATGCAATCTATAAGGGATACATGCAGGG 1130 Query 3193 GGTGAACGAAAACAATGCCGCAGGTATGTTTAATTACTTAC--AGATG--TTAGTTCCTG 3248 | ||| ||| ||||| ||| |||||| ||||| | |||| ||| | |||| Sbjct 1129 AATTAACAAAACAAATGCAGCA---ATGTTT--TTACTCGCCTTGATGTCTTAATACCTG 1075 Query 3249 CTGTAGCATTAAGATTACAATTAACACTCATGCAAGCAAGTGGATCAGGATTAACTTTGT 3308 | || ||| | | | ||||| ||||||||||||||||| |||||| | ||| Sbjct 1074 ACATTGCTTTACGTCTCAAGTTAACTCTCATGCAAGCAAGTGGGTCAGGACTCACT---C 1018 Query 3309 ATTC--TATTATTGGTAGAGCAATAAGATTATACAATAACTTTCCTTGGGGTTTGGTAAA 3366 |||| || || || |||||| | || |||| ||| | || || ||||| ||||| Sbjct 1017 ATTCATGATAATAGGAAGAGCACTTCGACTATATAATGATTTCCCATGGGGGAGAGTAAA 958 Query 3367 CACCCTAACAAGTGGAGAACTTGTAAATTGGAATGGTGC-AAGAGTGTTAATTGGAGATA 3425 || |||| |||||| | || || |||| ||| || | || || || | || | Sbjct 957 TACATTAACTAGTGGAAAGCTAGTTAATTAGAACCAGGCTATGACTG-CCATAGATGAAA 899 Query 3426 ATATGTATTATGGGTTTAAACGTGATCTTGGTGCTGCACGATCAACATTATATAAATCAT 3485 || | || |||||||| ||||| ||| | || | || |||||||| | || || || Sbjct 898 ATCTATACTATGGGTTCAAACGAGATTTAGGGGTAGCTCGATCAACCCTTTACAAGTC-- 841 Query 3486 TAGGATACGTTGCTCGAGAATTATTAGTCAGAATTAATGGTGAAAATACATTAAGACGTT 3545 | ||||| ||||| |||| |||||| | | || || || |||| ||||||| || | | Sbjct 840 TCGGATATGTTGCACGAGGGTTATTAATGAAGATCAACGGAGAAATTACATTACGAAGAT 781 Query 3546 TTATGGGTTTAACTGGCAACGTAAAAAACAAAAGACAACTTGATCAATTAATAGAGGCTT 3605 ||||||||| || || ||||| ||||| || |||||| |||||| ||| || ||||||| Sbjct 780 ATATGGGTTTGACAGGTAACGTCAAAAATAAGAGACAAATTGATC-ATTGATTGAGGCTT 722 Query 3606 A 3606 | Sbjct 721 A 721 >seq8154 Length=7804 Score = 161 bits (178), Expect = 2e-36 Identities = 345/506 (68%), Gaps = 26/506 (5%) Strand=Plus/Minus Query 3044 ACTCACGCTTATTGTGCCTTGGGAAAGAGAGGACAAGTCACTGATGAATTTTGT----AC 3099 ||||| || |||||||| || | ||||||||||| |||||||||| | || Sbjct 1639 ACTCATGCCTATTGTGC-------AAACGTGGACAAGTCACAGATGAATTTTATGCTAAC 1587 Query 3100 GAAAAT-TACA-AATGCGGTCCGAGATGAGTTGGGAGTAAATGTAGTATTACATTCAGGT 3157 || || || | ||||| || |||||||| | || |||| | |||| ||| || Sbjct 1586 GATAAGATAAATAATGCTGTTCGAGATGAACTTGGTGTAACAATTTCTCTACAGTCAAGT 1527 Query 3158 ACCTTAAATTCATTATACAAGAGCTATATGCAAGGGGTGAACGAAAACAATGCCGCAGGT 3217 || ||||| |||| |||||||| |||||||| || ||||||| ||||| |||| Sbjct 1526 ACATTAAACAATTTATTTAAGAGCTACATGCAAGGAGTCAACGAAATTAATGCACGAGGT 1467 Query 3218 ATGTTTAATTA--CTTACAGATGTTAGTTCCTGCTGTAGCATTAAGATTACAATTAACAC 3275 | || | | ||| | | | |||| | ||||| || | || | |||| Sbjct 1466 GTAATTTACTGGTCTTGAACAACA-ACTTCCAGACATAGCACTACGCTTGAAGTTAA--- 1411 Query 3276 TCATGCAAGCAAGTGGATCAGGATTAACTTTGTATTCTATTATTGGTAGAGCAATAAGAT 3335 |||| || ||||| ||||| || || | | | | || ||| | |||| || |||| Sbjct 1410 ---TGCATGCGAGTGGCTCAGGTTTGACACTCTTTACCATAATTAGACGAGCTATCAGAT 1354 Query 3336 TATACAATAACTTTCCTTGGGGTTTGGTAAACACCCTAACAAGTGGAGAACTTGTAAATT 3395 | || || | ||||| ||||| |||||| || |||||| |||| ||||||| ||||| Sbjct 1353 TTTATCATGATTTTCCGTGGGGAAGGGTAAATACACTAACAGGTGGTGAACTTGCAAATT 1294 Query 3396 GGAATGGTGCAA-GAGTGTTAATTGGAGATAATATGTATTATGGGTTTAAACGTGATCTT 3454 |||| ||| | | | | |||| ||||| | ||||| || ||||| | ||| | Sbjct 1293 AAAATGTGGCATTGCGAGCTG-TTGGTGATAACTTTTATTACGGTTTTAAGAGAGATTTA 1235 Query 3455 GGTGCTGCACGATCAACATTATATAA-ATCATTAGGATACGTTGCTCGAGAATTATTAGT 3513 |||| || ||||| || ||||| ||| ||||||||||| ||||| ||| || | | Sbjct 1234 GGTGTAGCTCGATCTACGCAGTATAAGATC-TTAGGATACGTAGCTCGTGAACTACTCAT 1176 Query 3514 CAGAATTAATGGTGAAAATACATTAA 3539 | || |||||||| | |||||||| Sbjct 1175 TAAGATCAATGGTGAGATTACATTAA 1150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12548546626780