Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq31322 136 6e-30 seq52808 107 3e-21 seq34540 77.0 5e-12 >seq31322 Length=13123 Score = 136 bits (150), Expect = 6e-30 Identities = 176/234 (75%), Gaps = 11/234 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGAC-GTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTT 59 ||| ||||| ||||||| ||| |||||| ||||| |||||| |||| ||| |||||| Sbjct 3428 GTATAAAGGTCAGGGACTGTA-TCAACGTAAGCTT-ATGACTTACGCTAACTGGGAATTA 3485 Query 60 CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-T 118 | | ||| | | || |||||||| | ||||| | ||||| | ||||| | Sbjct 3486 C-TGGTTCACGGGGAATAATTGCAAGCCCCGATCCCTACCACGAAGGGGGTTCAACGGGK 3544 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||||| |||| ||||||| || | || || ||| | |||||||||||| |||| Sbjct 3545 TACCCGAACCTCTCGGCCAGGGAAA---ACACGCTGATCCCTTCAGTGTAGCGCATGTGC 3601 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGG 232 ||||||||||||||||||| ||||||||||||||||| ||||| || ||||| Sbjct 3602 AGCCCAGAACATCTAAGGGCGTCACAGACCTGTTATTG-CTCAATCT--CGTGG 3652 >seq52808 Length=58657 Score = 107 bits (118), Expect = 3e-21 Identities = 121/160 (76%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 74 AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCG 133 || |||||||| | ||||| | ||||| | ||||| | |||||| || | ||| Sbjct 160 AATAATTGCAAGCCCCGATCCCTACCACGAAGGGGGTTCAACGGGTACCCGAACATCTCG 101 Query 134 GCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTA 193 |||| || | || || ||| | |||||||||||||||||| ||| ||||||||| Sbjct 100 GCCAGGGAAA---ACACGCTGATCCCTTCAGTGTAGCGCGCGTGCATCCCGGAACATCTA 44 Query 194 AGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||||||||||||||||||||||| ||||| || ||||| Sbjct 43 AGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 5 >seq34540 Length=789 Score = 77.0 bits (84), Expect = 5e-12 Identities = 80/103 (78%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| |||||| ||||| |||||| |||||||| |||| ||| Sbjct 117 GTACAAANGGCAGGGACGTAATCAACGTAAGCTT-ATGACTTACGCTTACTGGGAA-TTC 60 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 || ||| | | || |||||||| | ||||| | ||||| Sbjct 59 CTGGTTCATGGGGAATAATTGCAAGCCCCGATCCCTACCACGA 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751394142975