Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq22976 172 1e-40 seq36376 154 3e-35 seq15371 120 6e-25 seq14076 111 3e-22 seq11181 111 3e-22 seq61031 100 5e-19 seq73192 80.6 5e-13 seq67204 80.6 5e-13 seq67203 80.6 5e-13 seq35250 77.0 6e-12 seq21555 75.2 2e-11 >seq22976 Length=831 Score = 172 bits (190), Expect = 1e-40 Identities = 210/281 (75%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| ||| || | | | | | |||||||||||||||||||||||| Sbjct 132 ATGCTCTTAACTGAGTGTCCCGCGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 191 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 192 TCAAAGCAGGCCCGGTCGCCTGAATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGT 250 Query 156 TCTATTTTGTTGGTTTCTA----GGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTG 211 |||||||||| ||||| | | || | | |||||||| ||||| | |||||| Sbjct 251 TCTATTTTGTGGGTTTTTCTTCTGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCA 310 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| | |||||||||||||||||| ||||| || | |||||| Sbjct 311 TTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACGAAAGCGAAA 370 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || || ||||| |||||||||||||||| |||||||||| Sbjct 371 GCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 410 >seq36376 Length=26115 Score = 154 bits (170), Expect = 3e-35 Identities = 136/166 (82%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 152 CGGTTCTATTTTGTTGGTTTCTAGGAC--CGCCGTAATGATTAATAGGGATAGTCGGGGG 209 || ||||||||||||||||| | ||| || | |||||||||||||||| ||| ||||| Sbjct 1167 CGTTTCTATTTTGTTGGTTT-TCGGAAATCGACTTAATGATTAATAGGGACAGTTGGGGG 1225 Query 210 TGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGA 269 | |||||||| | ||||||||||||||||||| ||||||||||||||||||| Sbjct 1226 CATTAGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTTTGAAGACTAACTACTGCGT 1285 Query 270 AAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 ||| || ||||| || ||||||||||||| ||||||||||||| Sbjct 1286 AAGAATTTGCCAAGAATTTTTTCATTAATCA-AGAACGAAAGTTAG 1330 >seq15371 Length=2848 Score = 120 bits (132), Expect = 6e-25 Identities = 169/232 (73%), Gaps = 9/232 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT----GCTCGAATACATTAGCA 129 ||||||||| | |||| |||||| |||||| ||| || ||| ||||| | ||| Sbjct 775 TTTACTTTGTATAAAT-AGAGTGCTCAAAGTGGGCATTCAAAAGCTTGAATATTTGTGCA 833 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC--CGCCGTAAT 187 ||||||||| ||||||| || | ||||||| |||| ||| | ||| || |||| Sbjct 834 TGGAATAATGCAATAGGAAGTT-GTTTCTATTATGTTAATTT-TCGGAAATCGATTTAAT 891 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 ||||||| | | ||| || ||| | | |||||| | | || ||||| ||||| || Sbjct 892 GATTAATGAGAACAGTTGGTGGTATTATTATTCAGACGATAAAGCTGAAAATCTTGAATA 951 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATC 299 | |||||| ||||||||||| ||| | || ||||| |||| ||||| |||| Sbjct 952 TTTTGAAGGCTAACTACTGCAAAAACATTTTCCAAGAATGTATTCATCAATC 1003 >seq14076 Length=5346 Score = 111 bits (122), Expect = 3e-22 Identities = 122/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 155 TTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 ||||||||||||||||| | | | || | || | ||||||||||| |||||| | | Sbjct 592 TTCTATTTTGTTGGTTTTTGGAAATCGACTTAGTTATTAATAGGGACAGTCGGTAGCATA 533 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 ||||||||| || ||||||||||||||||||| |||||| |||||||||| || | Sbjct 532 AGTATTCAAATGACAGAGGTGAAATTCTTGGACCGTCTGAAGAGTAACTACTGC-AAGCC 474 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 || || || |||| |||||||| |||| |||||| Sbjct 473 ATTGGTAAATAATATTTTGATTAATCAAGGAACAAAAGTT 434 >seq11181 Length=8807 Score = 111 bits (122), Expect = 3e-22 Identities = 175/243 (72%), Gaps = 21/243 (9%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTG-TTCAAAGCAGGCCTTTGCTCGAATACATTAG--CAT 130 |||||||||| |||||||||| || ||| ||| | ||| |||| ||| Sbjct 3930 TTTACTTTGACAAAATTAGAGGCATTTAAAA---------GCTTGGATA--TTAGTGCAT 3978 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC--CGCCGTAATG 188 |||||||| | ||||| | ||| |||||||||||||| || ||||| || | || || Sbjct 3979 TGAATAATACATTAGGAAG-GCGTTTCTATTTTGTTGGATT-TAGGAAATCGACTTACTG 4036 Query 189 ATTAATAGGGATAG--TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||| ||||||| || | |||| | | || ||| | | |||||||| ||||||||| Sbjct 4037 ATTGATAGGGAGAGGGTGGGGGATATTAGCATTTAGAAGCCAGAGGTGGCATTCTTGGAC 4096 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 | ||||||||||||||| |||||| || ||| || |||||| || ||| |||| Sbjct 4097 TGTCAGAAGACTAACTACTGAGAAAGCATTTGTGAAGAATCTTTTCAGTAGTCA-AGAAC 4155 Query 307 GAA 309 ||| Sbjct 4156 GAA 4158 >seq61031 Length=19685 Score = 100 bits (110), Expect = 5e-19 Identities = 84/100 (84%), Gaps = 6/100 (6%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT----GCTCGAATACATTAGCA 129 ||||||||||||||||||||||| ||||||||||| ||| ||| |||| | | ||| Sbjct 9333 TTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCTTTTAAAAGCTTCAATATAGT-GCA 9275 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGT 169 ||||||||| ||||||| || || ||||||||||||||| Sbjct 9274 TGGAATAATGAAATAGGAAGT-CGTTTCTATTTTGTTGGT 9236 >seq73192 Length=3281 Score = 80.6 bits (88), Expect = 5e-13 Identities = 92/118 (78%), Gaps = 12/118 (10%) Strand=Plus/Plus Query 90 TAGAGTGTTCAAAGCAGGCCTTT----GCTCGAATACATTA--GCATGGAATAATAGAAT 143 ||||||| ||||||||||| ||| ||| || | |||| |||||||||||| ||| Sbjct 2051 TAGAGTGCTCAAAGCAGGCTTTTAAAAGCTTGA--AGATTAATGCATGGAATAATGAAAT 2108 Query 144 AGGACGTGCGGTTCTATTTTGTTGGTTTCTAGG--ACCGCCGTAATGATTAATAGGGA 199 |||| || | ||||||||||||||||| | || | | | |||||||||||||||| Sbjct 2109 AGGAAGT-CTTTTCTATTTTGTTGGTTT-TCGGAAATTGACTTAATGATTAATAGGGA 2164 >seq67204 Length=1629 Score = 80.6 bits (88), Expect = 5e-13 Identities = 92/118 (78%), Gaps = 12/118 (10%) Strand=Plus/Plus Query 90 TAGAGTGTTCAAAGCAGGCCTTT----GCTCGAATACATTA--GCATGGAATAATAGAAT 143 ||||||| ||||||||||| ||| ||| || | |||| |||||||||||| ||| Sbjct 399 TAGAGTGCTCAAAGCAGGCTTTTAAAAGCTTGA--AGATTAATGCATGGAATAATGAAAT 456 Query 144 AGGACGTGCGGTTCTATTTTGTTGGTTTCTAGG--ACCGCCGTAATGATTAATAGGGA 199 |||| || | ||||||||||||||||| | || | | | |||||||||||||||| Sbjct 457 AGGAAGT-CTTTTCTATTTTGTTGGTTT-TCGGAAATTGACTTAATGATTAATAGGGA 512 >seq67203 Length=3145 Score = 80.6 bits (88), Expect = 5e-13 Identities = 92/118 (78%), Gaps = 12/118 (10%) Strand=Plus/Minus Query 90 TAGAGTGTTCAAAGCAGGCCTTT----GCTCGAATACATTA--GCATGGAATAATAGAAT 143 ||||||| ||||||||||| ||| ||| || | |||| |||||||||||| ||| Sbjct 1231 TAGAGTGCTCAAAGCAGGCTTTTAAAAGCTTGA--AGATTAATGCATGGAATAATGAAAT 1174 Query 144 AGGACGTGCGGTTCTATTTTGTTGGTTTCTAGG--ACCGCCGTAATGATTAATAGGGA 199 |||| || | ||||||||||||||||| | || | | | |||||||||||||||| Sbjct 1173 AGGAAGT-CTTTTCTATTTTGTTGGTTT-TCGGAAATTGACTTAATGATTAATAGGGA 1118 >seq35250 Length=31805 Score = 77.0 bits (84), Expect = 6e-12 Identities = 172/256 (67%), Gaps = 32/256 (13%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT----GCTCGAATACATTAG-- 127 |||||||||||||||| | | ||||||||| ||| ||| | | ||| | Sbjct 16407 TTTACTTTGAAAAAATAGAAAGGCGAAAAGCAGGCTTTTAAAAGCTTGGGGATATTTGTG 16466 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGG--ACCGCCGTA 185 ||||| |||| |||| || || || ||||||||||||||||| | || | || | | Sbjct 16467 CATGGTATAAGGAAATAAGAAGT-CGTTTCTATTTTGTTGGTTTTTCGGAAATCGACTTG 16525 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCA---GAGGTGAAATTCTT 242 ||||||||| | || ||| | || | |||||||| | || ||||||||||||| Sbjct 16526 ATGATTAATTGTGACAGTGAGAGGCATTAGTATTCA---GACAAAGTAGGTGAAATTCTT 16582 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 ||| |||| |||| | || ||||| |||||| ||| |||| Sbjct 16583 GGA----------------TACTATGAAAACATTTGCCAAGAATGTTTCTATTTATCA-A 16625 Query 303 GAACGAAAGTTAGGGG 318 |||| |||||||| || Sbjct 16626 GAACAAAAGTTAGAGG 16641 >seq21555 Length=51692 Score = 75.2 bits (82), Expect = 2e-11 Identities = 105/141 (74%), Gaps = 11/141 (8%) Strand=Plus/Plus Query 74 TTTACTTTGA-AAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACA--TTAG--C 128 |||||||||| ||||| |||||| |||||| |||| ||| || || |||| | Sbjct 23314 TTTACTTTGACAAAAAATAGAGTCCTCAAAGGAGGCTTTTA----AAAACTAGTTAGTGC 23369 Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGT-TTCTAGGACCGCCGTAAT 187 |||||||||| ||||||| || || |||||||| |||||| ||| | | ||| Sbjct 23370 ATGGAATAATTAAATAGGAAGT-CGTTTCTATTTCGTTGGTCTTCGCAAATATACTAAAT 23428 Query 188 GATTAATAGGGATAGTCGGGG 208 |||||||||||| ||| |||| Sbjct 23429 GATTAATAGGGAAAGTGGGGG 23449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914438873920