Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq43644 109 2e-21 seq20342 105 3e-20 seq42635 98.7 4e-18 seq28231 80.6 1e-12 >seq43644 Length=17477 Score = 109 bits (120), Expect = 2e-21 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 |||||||||||| |||||||| |||||||||| ||||||||||||| ||| ||||| Sbjct 11976 AGTAAGAGCATACATGTTGGGATCCGAAAGATGATGAACTATGCCTGGCCAGGTTGAAGT 12035 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGAT 659 ||| |||| | ||| |||||| | |||| ||||| ||||| ||||||| Sbjct 12036 CAGGGGAACCCCTGATGGAGGAATGTAGCGATTCTGACGTGCTAATCGAT 12085 >seq20342 Length=16967 Score = 105 bits (116), Expect = 3e-20 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||| ||| | ||||| || | || ||||||| | || ||| ||||||| Sbjct 190 GAGTCGAGTTGCTTGAAAGTGCAGATCAACGTGTGAGGTAAGCTCCTCATAAGGCTAAAT 249 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||| || |||||||||||| ||||||| || | ||||| |||||| |||||| | Sbjct 250 ATTACCCCGAGACCGATAGCAAACAAGTATCGTAAGGGAAAGTTGAAAATAACTTTGAAG 309 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTT 187 |||||||| || | |||| ||| |||| Sbjct 310 AGAGAGTTCAAGAATACGTCAAACTGTT 337 >seq42635 Length=16277 Score = 98.7 bits (108), Expect = 4e-18 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| |||||| ||| | ||||| || || || ||||||| || || ||| ||||||| Sbjct 16160 GAGTTGAGTTGCTTGAAAGTGCAGATCAAAGTGTGAGGTAAGTTCCTCATAAGGCTAAAT 16219 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 ||| || |||||||||||| ||||||| |||| ||||| ||||||| |||||| Sbjct 16220 ATTACCCTGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTG 16276 >seq28231 Length=1967 Score = 80.6 bits (88), Expect = 1e-12 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 |||||||||||| ||||||||| ||||||||||||||||||||| ||| ||| Sbjct 194 AGTAAGAGCATACACGTTGGGACCAAAAAGATGGTGAACTATGCCTGGCCAGGTCGAACT 135 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGC 638 |||||||||| ||| || ||| || ||| Sbjct 134 CAGAGGAAACCCTGATGAAGGAACGTAGC 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078216110750