Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq22976 167 4e-39 seq26073 159 6e-37 seq52807 158 2e-36 seq68439 149 1e-33 seq60764 149 1e-33 seq60763 149 1e-33 seq32397 149 1e-33 seq73037 140 5e-31 seq31322 131 3e-28 seq25757 129 9e-28 seq72984 116 6e-24 seq81160 104 4e-20 seq65410 102 1e-19 seq17295 96.9 6e-18 seq52808 93.3 7e-17 seq77654 77.0 5e-12 seq80519 73.4 6e-11 seq39281 73.4 6e-11 >seq22976 Length=831 Score = 167 bits (184), Expect = 4e-39 Identities = 97/100 (97%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 761 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGC 702 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||| ||||||||||||||||||||| Sbjct 701 ACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 662 >seq26073 Length=12716 Score = 159 bits (176), Expect = 6e-37 Identities = 99/106 (93%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 153 GTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 212 ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 10698 GTTAACGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAGCTAAGAACGG 10639 Query 213 CCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||||||| ||||| |||||||||| |||||||||| Sbjct 10638 CCATGCCCCACCACCCACCGAATCGAGAAAGAGCTCTCAATCTGTC 10593 >seq52807 Length=6258 Score = 158 bits (174), Expect = 2e-36 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 6215 CTATTTAGAAGGACAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATGACTCCACCA 6156 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||||||||||| |||| |||||||||| |||||||||| Sbjct 6155 ACTAAGAACAGCCATGCACCACCACCCACCAAATCGAGAAAGAGCTCTCAATCTGTC 6099 >seq68439 Length=25208 Score = 149 bits (164), Expect = 1e-33 Identities = 103/117 (88%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||| |||| | |||||||| ||||| |||||||||||||||||||||||||||| Sbjct 3403 CTATTTATCAGGACAGAGTCTCGTTTGTTATTGGAATTAACCAGACAAATCACTCCACCA 3344 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||||||||||||| |||| |||||||||| | |||||||| Sbjct 3343 ACTAAGAACGGTCATGCACCACCACCCACCAAATCGAGAAAGAGCTCTTAATCTGTC 3287 >seq60764 Length=25017 Score = 149 bits (164), Expect = 1e-33 Identities = 93/100 (93%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 153 GTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 212 ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 100 GTTAACGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAGCTAAGAACGG 41 Query 213 CCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||| |||||||||| ||||| |||||||||| |||| Sbjct 40 CCATGCCCCACCACCCACCGAATCGAGAAAGAGCTCTCAA 1 >seq60763 Length=2798 Score = 149 bits (164), Expect = 1e-33 Identities = 93/100 (93%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 153 GTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 212 ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 100 GTTAACGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAGCTAAGAACGG 41 Query 213 CCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||| |||||||||| ||||| |||||||||| |||| Sbjct 40 CCATGCCCCACCACCCACCGAATCGAGAAAGAGCTCTCAA 1 >seq32397 Length=51829 Score = 149 bits (164), Expect = 1e-33 Identities = 186/251 (74%), Gaps = 7/251 (3%) Strand=Plus/Plus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || |||||||||| || | | | |||||||||||||||||| || | ||||||||||| Sbjct 14524 CCTTCAGTGTAGCATGCATCCAGTCCAGAACATCTAAGGGCAGCAAATACCTGTTATTGT 14583 Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC--ACCAACCAT 130 |||| || | ||||| | ||| |||||||| |||| || || || | Sbjct 14584 -TCAATCT-CGTGTGGCTAAACACCACCGGTCCCTCTGTGAAGACAAGTTAACGAAAAAA 14641 Query 131 AGTCGA---TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | || | ||||||||||| | ||| |||||||||||||||||| ||| | Sbjct 14642 AAATGACATTAACTCTATTTAGCAGTACAGAGTCCAGTTCGTTATCGGAATTAATCAGTC 14701 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||||| |||||||||||||||| ||||| |||||||| || |||| |||||||||| Sbjct 14702 AAATCACACCACCAACTAAGAACGACCATGTACCACCACTCAACGAATTGAGAAAGAGCT 14761 Query 248 ATCAATCTGTC 258 ||||| |||| Sbjct 14762 CTCAATTTGTC 14772 >seq73037 Length=11076 Score = 140 bits (154), Expect = 5e-31 Identities = 157/204 (77%), Gaps = 7/204 (3%) Strand=Plus/Minus Query 59 AGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA 118 |||||| || |||| |||| || | ||||| || |||| ||||||||||||||| | Sbjct 6602 AGACCTTTT-TTGC-TCAATCT-CGTGTGGCTAGACGCCACCAGTCCCTCTAAGAAGAAA 6546 Query 119 GCCAC---CAACCATA-GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 | ||| | | | || | ||||||||| | | ||||||||| |||||| Sbjct 6545 AGTAAACGCAAAAAAATGGCGTTAACTCTATTTAGCTAGACAGAGTCTCGTTCATTATCG 6486 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||| |||||||||||||||| ||||| | ||||||||| ||||||||||| ||| Sbjct 6485 TAATTAACCGGACAAATCACTCCACCCACTAATATCGGCCATGCTCCACCACCCATCGAA 6426 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 || |||||||| |||||||||||| Sbjct 6425 TCGAGAAAGAGTTATCAATCTGTC 6402 >seq31322 Length=13123 Score = 131 bits (144), Expect = 3e-28 Identities = 140/179 (78%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || |||||||||||| |||| ||||||||||||||||||| ||||||||||||||||| Sbjct 3581 CCTTCAGTGTAGCGCATGTGCAGCCCAGAACATCTAAGGGCGTCACAGACCTGTTATTG- 3639 Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG--CCAGCCAC-CAACCA 129 ||||| | || |||| || |||| ||||||||||||||| | || ||| | Sbjct 3640 CTCAATC-TCGTGGGGCTAGACGCCACCAGTCCCTCTAAGAAGAAAAATTAACGCAAAAA 3698 Query 130 TA--GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | | || | |||||||||||| | |||||||||||||||||||||||||||| Sbjct 3699 AAATGACGTTAACTCTATTTAGCAGGACAGAGTCTCGTTCGTTATCGGAATTAACCAGA 3757 >seq25757 Length=59248 Score = 129 bits (142), Expect = 9e-28 Identities = 102/119 (86%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTA-AG-GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 || ||||||| ||| || |||||||||||||||| ||||||| ||||||||||||| || Sbjct 30241 CTGTTTAGCA--TTACAGAGTCTCGTTCGTTATCGAAATTAACGAGACAAATCACTCTAC 30298 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||| ||||| |||| ||| ||||| |||||||||| ||||| |||| Sbjct 30299 TAACTAAGAACGGCCGTGCACTACCAGCCACCGAATCGAGAAAGAGCTCTCAATTTGTC 30357 >seq72984 Length=23306 Score = 116 bits (128), Expect = 6e-24 Identities = 95/116 (82%), Gaps = 6/116 (5%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||||| || ||||| |||||||||| || |||||| |||||||||||| Sbjct 352 TATTTAGCAGGGCAAAGTCTCCTTCGTTATCGAAA------AGACAAGTCACTCCACCAA 299 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||| |||||||||| ||||||| ||||| |||||||| | ||| |||||| Sbjct 298 CTAAGAATGGCCATGCACTGCCACCCAATGAATCGAGAAAGAGTTCTCACTCTGTC 243 >seq81160 Length=10593 Score = 104 bits (114), Expect = 4e-20 Identities = 65/70 (93%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| Sbjct 10530 CTATTTAGCAGGACAGAGTCTCGTTCGTTATCGCAATTAACCAGACAAATCACTCCACCA 10471 Query 202 ACTAAGAACG 211 |||||||||| Sbjct 10470 ACTAAGAACG 10461 >seq65410 Length=37588 Score = 102 bits (112), Expect = 1e-19 Identities = 75/85 (88%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTA-AG--GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 ||||||||||| | || |||||| |||||||||||||||||||||||||||||||||| Sbjct 8141 TATTTAGCAGGAAAGAGTTGTCTCGCTCGTTATCGGAATTAACCAGACAAATCACTCCAC 8200 Query 200 CAACTAAGAACGGCCATGCACCACC 224 ||||||||||| | ||||| || || Sbjct 8201 CAACTAAGAACAGGCATGCCCCCCC 8225 >seq17295 Length=30596 Score = 96.9 bits (106), Expect = 6e-18 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| ||| |||| || ||| ||| ||||||||| ||| ||||||| ||||||||| Sbjct 2116 CTAATTACCAGGCGAAAATCTTATTCCATATCGGAATAAACTTGACAAATTACTCCACCA 2057 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 || |||| ||||||||||||||| | | ||||| ||||| || | ||||||||| Sbjct 2056 CCTTAGAAAGGCCATGCACCACCATCTACTGAATCGAGAAAAAGTTGTCAATCTGT 2001 >seq52808 Length=58657 Score = 93.3 bits (102), Expect = 7e-17 Identities = 62/68 (91%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 79 CCTTCAGTGTAGCGCGCGTGCATCCCGGAACATCTAAGGGCATCACAGACCTGTTATTG- 21 Query 73 CTCAAACT 80 ||||| || Sbjct 20 CTCAATCT 13 >seq77654 Length=29694 Score = 77.0 bits (84), Expect = 5e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||| ||||| || || | |||||||| ||||| ||||| ||||||| |||||||| Sbjct 7092 CTATTTCGCAGGATAGAGTGTTGTTCGTTAATGGAATCAACCAAACAAATCCCTCCACCA 7033 Query 202 ACTAAGAACG 211 |||||||||| Sbjct 7032 ACTAAGAACG 7023 >seq80519 Length=27014 Score = 73.4 bits (80), Expect = 6e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || ||||||||| | | |||| |||||||| |||||||||||||| | |||||||||||| Sbjct 14421 CCTTCAGTGTAGTGTGTGTGCAGCCCAGAAAATCTAAGGGCATCATATACCTGTTATTGC 14480 >seq39281 Length=5040 Score = 73.4 bits (80), Expect = 6e-11 Identities = 55/65 (85%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 8 TGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 67 |||| || |||||||||||| ||||| ||| |||||||| |||| |||||||||||| Sbjct 545 TGGCCCCTTCAGTGTAGCGCACGTGCAGCCACGAACATCTGAGGGTATCACAGACCTGCC 604 Query 68 ATTGC 72 ||||| Sbjct 605 ATTGC 609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796158049365