Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq30048 232 1e-58 seq42143 228 1e-57 seq79826 152 9e-35 seq55810 152 9e-35 seq15340 150 3e-34 seq55811 147 4e-33 seq2868 141 2e-31 seq34213 114 2e-23 seq58187 109 9e-22 seq79196 104 4e-20 seq26923 102 1e-19 seq30862 98.7 2e-18 seq27550 98.7 2e-18 seq78735 95.1 2e-17 seq78524 91.5 3e-16 seq56061 86.0 1e-14 seq75095 84.2 4e-14 seq70810 82.4 1e-13 seq70809 82.4 1e-13 seq2351 82.4 1e-13 seq16682 75.2 2e-11 seq20436 73.4 7e-11 >seq30048 Length=49481 Score = 232 bits (256), Expect = 1e-58 Identities = 175/206 (85%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||||||||||| |||||||| ||||| |||| ||||||| ||||||| ||| || Sbjct 13922 GTCATCAGTAGGGTAGAACTAACCCATCTCACGACGCTCTAAACAAAGCTCACATTCACT 13863 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||| | | ||||| |||| || ||| |||||||||||||| ||||||||||||||| Sbjct 13862 ATTGGCGTGTGAATAATCAGACACTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCA 13803 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||||||| |||||||||| |||| ||||||| |||||| | |||||||||||||||| Sbjct 13802 ACATCGAAGTATCAAAAAGCGACGTTGCTATGACCGCTTGTCCACCACAAGCCAGTTATC 13743 Query 210 CCTGTGGTAACTTTTCTGGCACCTCT 235 ||||||||| || |||||| |||||| Sbjct 13742 CCTGTGGTAGCTATTCTGGAACCTCT 13717 >seq42143 Length=4348 Score = 228 bits (252), Expect = 1e-57 Identities = 193/236 (82%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| || | ||||| || | ||||| ||| | |||| ||||||||||||||||||| Sbjct 2975 TACTGAGTAGGATTACTATCGCAACGACGAGTCGTGAGTAAGGTAAAACTAACCTGTCTC 2916 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||| ||||||||||||||||||||||| |||||||||||| |||| | | Sbjct 2915 ACAACGGTCTGAACCCAGCTCACGTTCCCTATTAAAGGGTGAACAATCTGACGCATTGCC 2856 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||| |||| || |||||||||| || ||| ||||||||||||| | ||| ||| Sbjct 2855 AATTCTGTTTCGAAATTATAGGAAGAGATGAGATCAAAGGATCAAAAAGAGATGTCACTA 2796 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 ||| |||||||| || ||| |||||||||| ||||||||| |||||||||| |||| Sbjct 2795 TGACCGCTTGGCCGCTACATGCCAGTTATCGCTGTGGTAATTTTTCTGGCATCTCT 2740 >seq79826 Length=56461 Score = 152 bits (168), Expect = 9e-35 Identities = 98/107 (92%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 127 CTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGC 186 ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 32772 CTTCGCAATGATAGGAAGAGCCGCCATCGAAGGATCAAAAAGCGACGTCGCTATGAACGG 32713 Query 187 TTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 ||||| ||||||||| |||||||||||||||| ||||||||||||| Sbjct 32712 TTGGCCGCCACAAGCGCGTTATCCCTGTGGTAATTTTTCTGGCACCT 32666 >seq55810 Length=4682 Score = 152 bits (168), Expect = 9e-35 Identities = 148/191 (77%), Gaps = 11/191 (6%) Strand=Plus/Plus Query 44 AAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 103 ||| ||||| || ||| ||||| |||||| ||| || |||||||||||||| |||| ||| Sbjct 885 AAAGCTAACTTGACTCCTGACGTTCTAAATCCAACTTACGTTCCCTATTAGGGGGTAAAC 944 Query 104 AATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 ||| | | ||| |||||||||| |||||||||||| || | || |||||||| Sbjct 945 AATACGAAACTTGGCGAATTCTGC-----AATGATAGGAAGAACCAATGTCAAAGGATCA 999 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 ||||| ||||| |||| |||| | ||||||||||||||| ||||||||| ||| Sbjct 1000 AAAAGTGACGTCACTATAAACG------GGACACAAGCCAGTTATCTCTGTGGTAATTTT 1053 Query 224 TCTGGCACCTC 234 | |||||| || Sbjct 1054 TATGGCACGTC 1064 >seq15340 Length=40546 Score = 150 bits (166), Expect = 3e-34 Identities = 110/128 (86%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 40 GGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT 99 |||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| ||| Sbjct 35728 GGGTAAAACTAACCTGTCACATGGCGGTCTAAATCCAGCTCACGTTCCCTATTAGCAGGT 35787 Query 100 GAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG 159 || |||||| || ||| ||||||||||||| | |||||||| | |||||||||||| Sbjct 35788 GAGCAATCCGACACTTGGGGAATTCTGCTTCGCAAGGATAGGAAAAACCGACATCGAAGT 35847 Query 160 ATCAAAAA 167 || ||||| Sbjct 35848 ATAAAAAA 35855 >seq55811 Length=4724 Score = 147 bits (162), Expect = 4e-33 Identities = 146/188 (78%), Gaps = 12/188 (6%) Strand=Plus/Plus Query 44 AAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 103 ||| ||||| || ||| ||||| |||||||||| || |||||||||||||| ||| ||| Sbjct 928 AAAGCTAACTTGACTCCTGACGTTCTAAACCCAACTTACGTTCCCTATTAGGGGGCAAAC 987 Query 104 AATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 ||| ||| ||| |||||||||| || || ||||||||| | || |||||||| Sbjct 988 AATACAAAACTTGGCGAATTCTGC-----AATCAT-GGAAGAGCCAATGTCAAAGGATCA 1041 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 ||| | ||||| ||||||||| | ||||||||||||||| ||||||||| ||| Sbjct 1042 AAACGTGACGTCACTATGAACG------GGACACAAGCCAGTTATCTCTGTGGTAATTTT 1095 Query 224 TCTGGCAC 231 | |||||| Sbjct 1096 TATGGCAC 1103 >seq2868 Length=7401 Score = 141 bits (156), Expect = 2e-31 Identities = 127/158 (80%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 67 TCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTG 126 |||||||||||||| | ||||||||||| | |||||||||||||||||| ||||||| Sbjct 256 TCTAAACCCAGCTCCCTTTCCCTATTAGCGTGTGAACAATCCAACGCTTGGGGAATTCTA 315 Query 127 CTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGC 186 ||| | ||||||||| || | ||||||||| ||| |||||| ||||| |||||| | Sbjct 316 CTTTGCAATGATAGGATGAACTGACATCGAAAGATAAAAAAGAGACGTCACTATGAGTAC 375 Query 187 TTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| | ||| |||||| ||| | |||||| |||| Sbjct 376 TTGGCATCAACACGCCAGTCATCAC-ATGGTAATTTTT 412 >seq34213 Length=18877 Score = 114 bits (126), Expect = 2e-23 Identities = 119/155 (77%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||| |||||| ||| || ||| || |||||| |||| || ||| | |||| Sbjct 9769 ATCAGTAGAGTAAAATTAATTTGCATCAGGATAGTCTAACCCCAATACATGTTTC-TATT 9711 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | ||||||| |||||||||||| | | |||||||| | || |||||||| ||| | | Sbjct 9710 TGCGGGTGAAAAATCCAACGCTTGGCAAGTTCTGCTTTGCAATTATAGGAAGTGCCAATA 9651 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCT 187 || ||||||||| |||||| | |||||||| ||| Sbjct 9650 TCAAAGGATCAAGAAGCAATTTTGCTATGAATGCT 9616 >seq58187 Length=2702 Score = 109 bits (120), Expect = 9e-22 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 136 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCC 195 |||| |||||||| |||||||||| || |||||| |||||||||| || ||||| |||| Sbjct 687 GATATGAAGAGCCCACATCGAAGGTTCGAAAAGCGACGTCGCTATAAAGGCTTGACTGCA 746 Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 ||||||||||||||| ||||| |||||||||| Sbjct 747 GAAAGCCAGTTATCCCTACGGTAATTTTTCTGGCA 781 >seq79196 Length=21563 Score = 104 bits (114), Expect = 4e-20 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||| ||||||||| |||||| ||||| |||||| ||| |||||||||| |||| ||| Sbjct 3540 GAAATCTGCTTCGTAATGATAAGAAGAAACGACATGGAATAATCAAAAAGCGACGTTGCT 3481 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 |||||| || || | ||| || ||||||||||||||| ||||||| ||||| Sbjct 3480 ATGAACACTACGCCCCTGGAAGGCATTTATCCCTGTGGTAATTTTTCTGCCACCT 3426 >seq26923 Length=8128 Score = 102 bits (112), Expect = 1e-19 Identities = 102/131 (78%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 24 GCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCAC 82 |||||| ||||||||||| ||||||||||||||||| ||| ||||||| ||||||||| Sbjct 4752 GCGACGACTCATCAGTAGGTTAAAACTAACCTGTCTCGTGAAGGTCTAACCCCAGCTCAA 4693 Query 83 GTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGA 142 |||| ||||||| || |||||| | ||| | |||||| || | | || ||| Sbjct 4692 GTTCTCTATTAGCAGGAGAACAACTCGACGAGTGGTAAATTCTATTTTGCAGTTATTGGA 4633 Query 143 AGAGCCGACAT 153 ||||| ||||| Sbjct 4632 AGAGCAGACAT 4622 >seq30862 Length=13312 Score = 98.7 bits (108), Expect = 2e-18 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||| |||||||| |||| ||||||| ||||||||| ||||||||| |||| || Sbjct 7343 TCATCAGTTGGGTAAAAATAACATGTCTCACCACGGTCTAACCCCAGCTCATGTTCATTA 7402 Query 91 TTAGTGGGTGAACAATCCAACG 112 |||||| ||||||||||| ||| Sbjct 7403 TTAGTGCGTGAACAATCCGACG 7424 >seq27550 Length=15824 Score = 98.7 bits (108), Expect = 2e-18 Identities = 66/72 (92%), Gaps = 4/72 (6%) Strand=Plus/Minus Query 25 CGACG-GTCATCAGTAGGGTAAAA---CTAACCTGTCTCATGACGGTCTAAACCCAGCTC 80 ||||| |||||||||||| ||||| ||||||||||||| ||||||||||||||||||| Sbjct 72 CGACGAGTCATCAGTAGGATAAAAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTC 13 Query 81 ACGTTCCCTATT 92 |||||||||||| Sbjct 12 ACGTTCCCTATT 1 >seq78735 Length=8389 Score = 95.1 bits (104), Expect = 2e-17 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 85 TCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAG 144 |||| ||||||||| ||| || || || ||| | |||||| |||| ||||||||| Sbjct 4174 TCCCAATTAGTGGGCGAATAACCCGACACTTGGCTCATTCTGATTCGCATTGATAGGAAT 4233 Query 145 AGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204 | ||||||||||||| |||||||| || || |||||||| ||| || ||||| || Sbjct 4234 AATCGACATCGAAGGACCAAAAAGCGACTTCCCTATGAACATTTGTCTAGTACAAGTCAC 4293 Query 205 TTATC 209 ||||| Sbjct 4294 TTATC 4298 >seq78524 Length=26347 Score = 91.5 bits (100), Expect = 3e-16 Identities = 76/92 (83%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||||| ||||| ||||||||||||||||||||||| || || ||||||||| |||| Sbjct 25958 ATGATGAGAAGAACCGACATCGAAGGATCAAAAAGCGACTTCACTATGAACGTTTGGTCA 25899 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 ||| ||||||| ||| ||||| ||| ||||| Sbjct 25898 CCAAAAGCCAGATATTCCTGT-GTACATTTTC 25868 >seq56061 Length=28019 Score = 86.0 bits (94), Expect = 1e-14 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| |||||||||||||||||||||||||||||| Sbjct 9942 TACTGAGCAGGATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 9883 Query 60 ATGACGGTCTAA 71 |||||||||||| Sbjct 9882 ATGACGGTCTAA 9871 >seq75095 Length=15786 Score = 84.2 bits (92), Expect = 4e-14 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 12 ATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70 ||||| |||| | ||| || |||||||||||||||||||||||||||| ||||||||| Sbjct 13326 ATTACTATTGTATCAACGAGTTATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTA 13385 Query 71 AACCCAGCTCACG 83 | |||| |||||| Sbjct 13386 AGCCCAACTCACG 13398 >seq70810 Length=41455 Score = 82.4 bits (90), Expect = 1e-13 Identities = 96/130 (74%), Gaps = 5/130 (4%) Strand=Plus/Minus Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 ||||||| ||||| |||||| | |||||||||| ||||||||||| | ||| | Sbjct 559 CATGACGTTCTAAGCCCAGCATGCTTTCCCTATTAACACGTGAACAATCCGGCACTTGCT 500 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||| ||||||| ||||||||| || |||| ||| ||||||||| |||| || Sbjct 499 AAATTGTGCTTCGTAATGATAGGAGGACCCGA-----AAGAATCAAAAAGTGACGTTTCT 445 Query 179 ATGAACGCTT 188 | ||| ||| Sbjct 444 AGAAACCCTT 435 >seq70809 Length=9085 Score = 82.4 bits (90), Expect = 1e-13 Identities = 96/130 (74%), Gaps = 5/130 (4%) Strand=Plus/Plus Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 ||||||| ||||| |||||| | |||||||||| ||||||||||| | ||| | Sbjct 7489 CATGACGTTCTAAGCCCAGCATGCTTTCCCTATTAACACGTGAACAATCCGGCACTTGCT 7548 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||| ||||||| ||||||||| || |||| ||| ||||||||| |||| || Sbjct 7549 AAATTGTGCTTCGTAATGATAGGAGGACCCGA-----AAGAATCAAAAAGTGACGTTTCT 7603 Query 179 ATGAACGCTT 188 | ||| ||| Sbjct 7604 AGAAACCCTT 7613 >seq2351 Length=9111 Score = 82.4 bits (90), Expect = 1e-13 Identities = 96/130 (74%), Gaps = 5/130 (4%) Strand=Plus/Minus Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 ||||||| ||||| |||||| | |||||||||| ||||||||||| | ||| | Sbjct 1623 CATGACGTTCTAAGCCCAGCATGCTTTCCCTATTAACACGTGAACAATCCGGCACTTGCT 1564 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||| ||||||| ||||||||| || |||| ||| ||||||||| |||| || Sbjct 1563 AAATTGTGCTTCGTAATGATAGGAGGACCCGA-----AAGAATCAAAAAGTGACGTTTCT 1509 Query 179 ATGAACGCTT 188 | ||| ||| Sbjct 1508 AGAAACCCTT 1499 >seq16682 Length=11138 Score = 75.2 bits (82), Expect = 2e-11 Identities = 65/81 (80%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||| ||||| | ||||||||||| | | ||| |||||||| |||||||||||| || Sbjct 479 TCAGCAGTATGTTAAAACTAACCCTAATTACGACAGTCTAAACTCAGCTCACGTTCAATA 420 Query 91 TTAGTGGGTGAACAATCCAAC 111 ||| | |||||||||||| || Sbjct 419 TTATTAGGTGAACAATCCGAC 399 >seq20436 Length=24561 Score = 73.4 bits (80), Expect = 7e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 |||||||||||||| ||| |||| ||| ||||||| |||||| |||||||| |||||| Sbjct 13573 TATGAACGCTTGGCCGCCGCAAGTCAGATATCCCTCTGGTAATTTTTCTGGGACCTCT 13630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853689438240