Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq31322 140 6e-31 seq52808 96.9 7e-18 seq34540 87.8 3e-15 >seq31322 Length=13123 Score = 140 bits (154), Expect = 6e-31 Identities = 188/258 (73%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||||| ||| || |||| || | ||||| |||||||||||||||| Sbjct 3681 CTTCTTAGAGGGACTGGTGGCGTCTAGCCCCACGA-GATTGAG-CAATAACAGGTCTGTG 3624 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 | ||||||||||||||||||| |||| |||||||||||| | || || || | Sbjct 3623 ACGCCCTTAGATGTTCTGGGCTGCACATGCGCTACACTGAAGGGATCAGCGTGT---TTT 3567 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||| ||||| | | || | | ||||| | ||||| | | ||| Sbjct 3566 CCCTGGCCGAGAGGTTCGGGTAMCCCGTTGAACCCCCTTCGTGGTAGGGATCGGGGCTTG 3507 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | ||| || ||| || ||| |||| ||||| ||| ||||||| Sbjct 3506 CAATTATTCCCCGTGAACCAGTAATTCCCAGTTAGCGTAAGTCATAAGCTTACGTTGATA 3447 Query 311 ACGTCCCTGCCCTTTGTA 328 ||||||| ||||| || Sbjct 3446 CAGTCCCTGACCTTTATA 3429 >seq52808 Length=58657 Score = 96.9 bits (106), Expect = 7e-18 Identities = 115/153 (75%), Gaps = 5/153 (3%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 13 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTTCCGGGATGCACGCGCGCTAC 71 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 ||||| | || || || | || |||||| | || ||||| | | | || | Sbjct 72 ACTGAAGGGATCAGCGTGT---TTTCCCTGGCCGAGATGTTCGGGTACCCGT-TGAACCC 127 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | ||||| | ||||| | | ||||||||||| Sbjct 128 CCTTCGTGGTAGGGATCGGGGCTTGCAATTATT 160 >seq34540 Length=789 Score = 87.8 bits (96), Expect = 3e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| | ||||| | | ||||||||||| | | | ||| |||||| || |||||||| Sbjct 17 TCGTGGTAGGGATCGGGGCTTGCAATTATTCCCCATGAACCAGGAATTCCCAGTAAGCGT 76 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||| ||||||||||||||||||| |||||| Sbjct 77 AAGTCATAAGCTTACGTTGATTACGTCCCTGCCNTTTGTA 116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946412261120