Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq19873 210 7e-52 seq44062 154 4e-35 seq8738 152 2e-34 seq21555 147 7e-33 seq937 131 5e-28 seq53459 127 6e-27 seq6520 125 2e-26 seq68946 122 3e-25 seq11181 93.3 1e-16 seq67755 91.5 4e-16 seq49838 84.2 7e-14 seq55844 77.0 1e-11 >seq19873 Length=4371 Score = 210 bits (232), Expect = 7e-52 Identities = 314/438 (72%), Gaps = 32/438 (7%) Strand=Plus/Plus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 |||| || || ||| ||||||||||| |||| || | |||||||||||||||||||||| Sbjct 290 ATTGAGTGATGTGCCTGCCTGCTGCCTCCCTTAGAAGAGGTAGCCGTTTCTCAGGCTCCC 349 Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 ||||| |||||||||||| ||||||| ||||| || | |||| | || |||| | Sbjct 350 TCTCCAGAATCGAACCCTGATTCCCCATTACCTGTCAAAACCACTCTGGGAGTCTATGCC 409 Query 193 ACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCG 252 || |||| |||||||||| | | || ||| || | | ||||| || | Sbjct 410 ACACTCGACAGTTGATAGGATAAACCTTAGAAGGATACGTTACCGGCATAAAGA------ 463 Query 253 ATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAAT 312 || || ||| || ||| |||| || ||||||| | || ||| Sbjct 464 ----GTGAA---ATTCAGAGTCAACAAGATTTTA--AA-----TTGGTTTAT-ATAAAAT 508 Query 313 AAATACACCCCTTCCG-AAGTCGGGG--TTTTTAGCATGTATTAGCTCTAGAATTACCAC 369 ||| || |||| || |||| || ||||| ||||||||||| || ||||||||| | Sbjct 509 AAAAGCATCCCTCACGTAAGTTCGGTATTTTTTCGCATGTATTAGTTCCAGAATTACCGC 568 Query 370 GGTTATCCATGTAG-TAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428 |||||||| ||| | || | |||| | || | | ||||||||||||||||||| Sbjct 569 AGTTATCCAAGTAACTGAG--AATATCCAGTATATTAGGGTTGATTTAATGAGCCATTCG 626 Query 429 CAGTTTCACTGTATAGATT--GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 486 | ||| ||| ||| ||| | || ||||| |||||||||| ||||||||||||||||| Sbjct 627 CGGTTGCAC---ATAAATTAGGTTTGTACTTCGACATGCATGCCTTAATCTTTGAGACAA 683 Query 487 GCATATGACTACTGGCAG 504 | |||||||||||||||| Sbjct 684 GTATATGACTACTGGCAG 701 >seq44062 Length=11384 Score = 154 bits (170), Expect = 4e-35 Identities = 164/210 (78%), Gaps = 11/210 (5%) Strand=Plus/Plus Query 301 TTTTTATCTAATAAATACACCCCTTCCG-AAGTCGGGG--TTTTTAGCATGTATTAGCTC 357 |||| |||||||||| || |||| || |||| || ||||| |||||||||||||| Sbjct 3475 TTTTGATCTAATAAAAGCATCCCTCACGTAAGTTCAGGATTTTTTCGCATGTATTAGCTC 3534 Query 358 TAGAATTACCACGGTTATCCATGTAG-TAAGGTACTATCAAATAAACGATAACTGATTTA 416 |||||||| | ||||||| ||| | || | |||| | || | | ||||||| Sbjct 3535 CAGAATTACTGCAGTTATCCGAGTAACTGAG--AATATCCAGTATATTAGGTGTGATTTA 3592 Query 417 ATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGACATGCATGGCTTAA 474 ||||||||||||| | ||||| || ||| |||| |||||||||||||||||||||| Sbjct 3593 ATGAGCCATTCGCGGGTTCACCTTA---ATTAAGCTTGTACTTAGACATGCATGGCTTAA 3649 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||| ||||| Sbjct 3650 CCTTTGAGACAAGCATATGACTACCGGCAG 3679 >seq8738 Length=4798 Score = 152 bits (168), Expect = 2e-34 Identities = 108/124 (87%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 |||||||||||||| ||||||||||| |||| || |||||||||||||||||||||||| Sbjct 335 ATTGGGTAATTTGCATGCCTGCTGCCTCCCTTAGAAGTGGTAGCCGTTTCTCAGGCTCCC 276 Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 |||||||||||||||||| |||||||||||||||| | |||| || ||| |||| | Sbjct 275 TCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTCAAAACCACTGTGGGCGTCTATGCC 216 Query 193 ACCA 196 |||| Sbjct 215 ACCA 212 >seq21555 Length=51692 Score = 147 bits (162), Expect = 7e-33 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 |||||||||||||| |||||||||| |||| | |||||| |||||||||| |||||| Sbjct 23248 ATTGGGTAATTTGCATTCCTGCTGCCTCCCTTAGGAGTGGTAACCGTTTCTCAAGCTCCC 23189 Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 |||||||| | |||||| ||||| |||| || || | |||| | || |||| | Sbjct 23188 TCTCCGGATTTGAACCCGGATTCCTCGTTTCCAGTCAAAACCACTATGGGAGTCTATGCC 23129 Query 193 ACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCG 252 || |||| ||||||||||||| || || ||| || | |||| ||| || ||||||| Sbjct 23128 ACAGTCGACAGTTGATAGGGCATAACTTAGAAGGATACGTCGCTGGCGTAAAGCCATGCA 23069 Query 253 ATTCGTTAA-GTTATTATGAATCACCAA 279 || | || |||||| |||||||||| Sbjct 23068 ATCTGCAAATGTTATTCCGAATCACCAA 23041 >seq937 Length=1606 Score = 131 bits (144), Expect = 5e-28 Identities = 80/85 (94%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 ||||||||| |||||||||||| | |||||||||||||||||||||||||||| |||||| Sbjct 1452 GTGTCGGGAGTGGGTAATTTGCACCCCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTC 1511 Query 125 AGGCTCCCTCTCCGGAATCGAACCC 149 ||| ||||||||||||||||||||| Sbjct 1512 AGGATCCCTCTCCGGAATCGAACCC 1536 Score = 78.8 bits (86), Expect = 3e-12 Identities = 60/70 (86%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCA-TTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463 |||||||||||||||||||| ||||||||||||||||| | | | ||||||||| | Sbjct 1537 ATAACTGATTTAATGAGCCAATTCGCAGTTTCACTGTACCGGCCGTGTGTACTTAGACTT 1596 Query 464 GCATGGCTTA 473 |||||||||| Sbjct 1597 GCATGGCTTA 1606 >seq53459 Length=24421 Score = 127 bits (140), Expect = 6e-27 Identities = 90/103 (87%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 ||||||||||||||| ||||||| | |||||| || |||||| |||||| | |||||||| Sbjct 17375 ATTGGGTAATTTGCGTGCCTGCTTCTTTCCTTAGAAGTGGTAACCGTTTGTTAGGCTCCC 17434 Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCA 175 ||||| |||||||||||| |||||||||||||||| | |||| Sbjct 17435 TCTCCAGAATCGAACCCTGATTCCCCGTTACCCGTCAAAACCA 17477 >seq6520 Length=56542 Score = 125 bits (138), Expect = 2e-26 Identities = 152/203 (75%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138 |||||| || | ||||||||| ||| | |||||||| ||||||||||||||| ||||| Sbjct 47164 TAATTTTCGTGTCTGCTGCCTCTCTTAAACGTGGTAGCTGTTTCTCAGGCTCCCCCTCCG 47223 Query 139 GAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATC 198 |||||||||||| ||| || |||||| | | | || | || || |||| | || || Sbjct 47224 GAATCGAACCCTGATT-CCTGTTACCTG-TAAAACTACTGTGGGTGTCTATGCCACAGTC 47281 Query 199 GAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGT 258 || ||| ||||||||| | | |||| || | ||||||| || |||||||||| | Sbjct 47282 GACAGTAGATAGGGCAAACCTATGAAGGATACGTCGCCGGTGTAAAGCCATGCGATCTGC 47341 Query 259 TAA-GTTATTATGAATCACCAAG 280 || |||||| |||| || ||| Sbjct 47342 AAATGTTATTCAGAATTACGAAG 47364 >seq68946 Length=18881 Score = 122 bits (134), Expect = 3e-25 Identities = 135/175 (77%), Gaps = 9/175 (5%) Strand=Plus/Plus Query 329 AAGTCGGGGTTTTTAG-CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAG-TAA 386 || ||||| ||||| | |||||| |||||| | ||||||| | ||||| | ||| | | Sbjct 17185 AATTCGGGATTTTTTGGCATGTACTAGCTCCACAATTACCGCAATTATCTAAGTAACTGA 17244 Query 387 GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT 446 | | |||| | || || |||||||||||| ||||||| ||||||| || || Sbjct 17245 G--AATATCCAGTATTTTATGTGTGATTTAATGAGGCATTCGCGGTTTCACCTTA---AT 17299 Query 447 T--GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499 | |||| ||||||||||||||||||| ||||||||||| ||||||||||| ||| Sbjct 17300 TAGGCTTGTACTTAGACATGCATGGCTCAATCTTTGAGAAAAGCATATGACGACT 17354 >seq11181 Length=8807 Score = 93.3 bits (102), Expect = 1e-16 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 ||| || ||||||||||||||||||||||||||||||||||||| |||| |||||| ||| Sbjct 3644 CTTAGAAGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGACCCCTGATTCCCTGTT 3585 Query 162 ACCC 165 |||| Sbjct 3584 ACCC 3581 >seq67755 Length=20894 Score = 91.5 bits (100), Expect = 4e-16 Identities = 242/360 (67%), Gaps = 25/360 (7%) Strand=Plus/Minus Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 209 |||||| |||||| | ||| | | || ||| | ||| | || |||| |||||||| Sbjct 16801 TAATTCTCCGTTAACTGTTAAAATTAT--TAGTC---TATGCCACAGTCGACAGTTGATA 16747 Query 210 GGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAA-GTTATTA 268 || || | || ||| ||| | | |||| || |||||||||| || || | ||||| Sbjct 16746 GGACACACCTTAGAAGGAAACGTTGCCGCTATAAAGCCATGCGATCCGCAAACGCTATTA 16687 Query 269 TGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCG 328 | | |||||| || |||| ||| | |||||||| || ||| || Sbjct 16686 ACAGTAACCAAGTTTTTA--AA-----TTGGGTTTGAA-CTAATAAAAGCATTCCTCACG 16635 Query 329 -AAGTCGGGG--TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA 385 |||| ||| ||||| |||| ||| | || ||||| || | || || || |||| Sbjct 16634 TAAGTTCGGGATTTTTTCCCATGCATTTGATCCAGAATAACTGCAGTAATTCA---AGTA 16578 Query 386 AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA 445 | | |||| | || | | |||||||||||| |||| | ||||||| || | Sbjct 16577 ACTGAATATCTAGTATATTAGGTGTGATTTAATGAGAAATTCACGGTTTCACC---TACA 16521 Query 446 TTG--CTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || | | ||||| ||||||||||||| |||||||||||||| || ||||| || ||| Sbjct 16520 TTAGCCATGTACTTGGACATGCATGGCTGAATCTTTGAGACAATCAATTGACTCCTCGCA 16461 >seq49838 Length=23371 Score = 84.2 bits (92), Expect = 7e-14 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 ||||||||||| || |||| |||||| |||| ||| || ||| ||||||||| ||| | Sbjct 4271 ATTGGGTAATTAGCATGCCTCCTGCCTCCCTTAAATGAGGCAGCTGTTTCTCAGACTCAC 4212 Query 133 TCTCCGGAATCGAACCCTAATTCCCC 158 | || |||||||||| || ||||||| Sbjct 4211 TATCTGGAATCGAACACTGATTCCCC 4186 >seq55844 Length=20600 Score = 77.0 bits (84), Expect = 1e-11 Identities = 64/77 (83%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 91 CTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT 150 ||||||| | ||| ||| |||||| |||||| ||||||||||| | ||| ||||| || Sbjct 1076 CTGCTGCTTACCT-GGAAGTGGTAAAGGTTTCTTAGGCTCCCTCTTCAGAACCGAACTCT 1018 Query 151 AATTCCCCGTTACCCGT 167 |||||||||||||||| Sbjct 1017 CATTCCCCGTTACCCGT 1001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509143875840