Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq58440 197 1e-45 seq27661 140 3e-28 >seq58440 Length=15377 Score = 197 bits (218), Expect = 1e-45 Identities = 554/843 (66%), Gaps = 22/843 (3%) Strand=Plus/Minus Query 66038 TCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCC 66097 |||||||||| | |||| || || |||||||| || | |||| ||| ||| || ||| Sbjct 5294 TCGTCAGGAGAGCTATATTCTACTATTTCGGTACATAAATTAGAGCATTTTATAGTTCCC 5235 Query 66098 AAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCG 66157 || |||| ||||||| || |||||||| | |||||||| | |||||| ||||| || Sbjct 5234 AAGTTCTTTTGATTAGATTTCCGATTGCAAGAGTCCTTGTATAACATGTAGGGAGTCCCA 5175 Query 66158 GTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACC 66217 || |||| ||| || ||||||||||| | ||| | | || |||| | || Sbjct 5174 GTTTCAATTTGCGATTCAATGATGGCCTCCCACACTTTATGAGCAG-----GTACCTGCC 5120 Query 66218 GCCCTACCTTTGCGTTCGTA-----ATGTTCG-TAGAGGTGTTCGAAGGATTCACCCCAT 66271 ||| | |||| ||| | || | | || || | || || ||||||||| Sbjct 5119 GCCTGAA-TTTGTTTTCATCCTCATATTTAAGATATAGTTTCTCAAAATCTTCACCCCAA 5061 Query 66272 ACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCT 66331 || || | | |||||| | || |||||||| || |||| |||||||| ||| Sbjct 5060 ACATCATCTAACCCTGGACATTCATGAGGACACATAAGGCTCCAAATACCATCCTCTTCC 5001 Query 66332 ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGC 66391 || || ||| |||| |||||| ||||| || || ||||| | ||| | ||| | |||| Sbjct 5000 ACTCGTTTCATGAATAAATCAGGAATCCAAAGAGCATAGAATAAATCCCTTGCCCTTTGC 4941 Query 66392 TCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGT 66451 || ||| || |||||| || | || || || ||||| | || |||||||| ||| Sbjct 4940 TCTTCAGCCCCCGTATTTTTACGTAGTTCTAGAAAATCAAAAACATCCGCATGCCAAGGT 4881 Query 66452 TCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCG 66511 || | || || || || | ||| | |||| ||||||||||| || || || Sbjct 4880 TCTAAATAAATTGCAAATGCGCCAGGCCTTTTGTTACCACCTTGGTCAACATATTTCGCC 4821 Query 66512 ACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCG 66571 ||| || || || || | ||| ||||| | ||| ||||| | |||||||| || | Sbjct 4820 GTATTATTAAAAACTCGAAGCATGGGTACAATCCCATTAGAGTATCCATTGGTCCCCGCA 4761 Query 66572 ATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTC 66631 || || ||| ||| || ||| |||| ||| | ||| || || || || | || Sbjct 4760 ATATAAGAACCTTTTGCTCGAATACAATGAATATTAATACCGATCCCTCCAGCGGATTTT 4701 Query 66632 GAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATG 66691 || || ||| | || || | ||||| |||||||||||| || Sbjct 4700 GAAATAATTGCAGTTTGTTTCAGAGTATCATAAATGCCTTCAATGGAGTCAGAGGACATC 4641 Query 66692 GT---CAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTG 66748 || | | | ||| ||| ||| ||| ||||| ||||| || || ||| || ||| Sbjct 4640 GTTAATAAAAAGCAGCTTGA--TAA-TTGAGGTTTTGGTGTAGCAGCATTGAAAAGTGTG 4584 Query 66749 GGTGTAGCGTGCGTAAAGTA--ATGGCGAGACATGTAATTGTACGTCTCGATGACAGCAT 66806 || | || || || || || | | |||| | | ||||| |||| ||| ||| | | Sbjct 4583 GGAGAGGCATGTGTGAAATACCCTTGAGAGAGAAG--GTTGTAGGTCTTGATCACACCTT 4526 Query 66807 CAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTTCGA 66866 |||| | ||| || ||||| || | | || |||||| | | ||| |||| ||| | Sbjct 4525 CAATATCTTCTCCGTGAATACCTACAGAGACTCTCATCAGCATATGTTGTGGCCTTTCAA 4466 Query 66867 CCA 66869 ||| Sbjct 4465 CCA 4463 Score = 98.7 bits (108), Expect = 8e-16 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || |||||||| || ||| |||| || || ||||| | |||||| ||||| || || Sbjct 6365 TCCACTGTGAACTGAATGGCACTAGCCGCTGCTTTGGTACGAAGATAATACATCCCTGTT 6306 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || | || |||| | ||||||||||| |||| | |||| | || || |||| Sbjct 6305 TTCAATCCGAGTTTCCAACCGTAGAAATGCATGGATGTAAGTTTTCCGTAGTTAGGCTGT 6246 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 || | ||| || ||||| || ||||| ||||| || || || ||||| |||||||| Sbjct 6245 GCGATATGTATGTTCAAGGATTGACTTTGATCAATAAAAGCCCCGCGATCAGCAGCCATT 6186 Query 65258 TCAATGA 65264 | || || Sbjct 6185 TGAAGGA 6179 >seq27661 Length=34041 Score = 140 bits (154), Expect = 3e-28 Identities = 231/333 (69%), Gaps = 3/333 (1%) Strand=Plus/Plus Query 61041 AGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTA 61100 |||||||||| | | |||||| | | || ||||| ||| ||||||||| |||||| Sbjct 21467 AGAGAATCCTAATAGATTCGTAATCCTTCCTATCGAATATTTTGATATTTGGAACATGTA 21526 Query 61101 CAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAA 61160 || ||||| | ||| ||| ||||| |||||||| || || | ||| ||| ||| Sbjct 21527 TAAGAAGGCCGTAGCAAGCTTTTGGACTGTGGAGGAAGTGGACCTCAGCAAGGACTTGAT 21586 Query 61161 TGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAA---CATGTGTTGGCGTT 61217 ||||||||| || || | ||| ||| | | ||| | | || ||||| || Sbjct 21587 CGACTGGGAGGAGAAATTGAATGATGAGGAACGGTACTTTATATCACGAGTTTTGGCATT 21646 Query 61218 CTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGT 61277 || || || |||||||| || || || ||||| | |||| | || | ||||| || Sbjct 21647 TTTCGCTGCGTCGGACGGAATTGTGAACGAGAACATTGTGGAGAGATTTACACAGGAAGT 21706 Query 61278 GCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTC 61337 || || |||||||| | ||||||||||| || || ||||| || ||||| | ||||| Sbjct 21707 ACAGGTTACGGAGGCGAGATGTTTCTACGGGTTTCAAATTGCAATCGAGAACATTCACTC 21766 Query 61338 GGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 || |||||| | || || || || ||||| Sbjct 21767 CGAAATGTACTCATTACTTATAGACACTTACAT 21799 Score = 125 bits (138), Expect = 6e-24 Identities = 307/459 (67%), Gaps = 15/459 (3%) Strand=Plus/Plus Query 61480 tttGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATT--TTTCAGTGGATCGT 61537 || || || ||| | | || ||||| | |||||||| | || |||||| | || | Sbjct 21980 TTCGGAGATCGAATTATTGCCTTTGCTGCCGTCGAGGGCATCTTCTTTTCAGGG--TCAT 22037 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 |||| | || || ||||| |||||||||||||| ||||||||||| ||||| || | Sbjct 22038 TTGCTTCCATATTCTGGTTAAAGAAACGTGGACTCATGCCCGGTCTCACCTTTTCAAACG 22097 Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG-CTGTTTTGCTATTCAAACGC 61656 | | ||||| | |||||||| ||||| ||||||| |||| || | || | || Sbjct 22098 AACTTATATCTAGAGACGAGGGATTGCATACAGATTTTGCCTGTCTT-ATGTTTAGAC-- 22154 Query 61657 TATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACT 61716 | || | || || || | || ||| | | || ||| |||||||||| || | Sbjct 22155 -ACCTTGCTCATAAGCCATCCGTGGCTCGTATTGTCGAAATTATTCGTGAGGCTGTTGCG 22213 Query 61717 ATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776 || ||| |||||||| ||||| || | ||||| | | | || ||||| |||| Sbjct 22214 ATTGAAAGTGAATTTCTAACTGAGGCACTCCCCGTTCGAATGTTGGGAATGAACTGTGAT 22273 Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA---TTTGGGTATG 61833 ||| ||| |||||| |||||||||| || | || | || || | || | Sbjct 22274 TCCATGGTGCAATATATTAAATTTGTTGCAGATAGACTTCTTGTAGAGCTTAATTGTCCG 22333 Query 61834 AAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGC 61893 || || || || | || || |||||||| ||||| | ||||| || ||||| Sbjct 22334 AA---AATTTACCTAACTGAGAATCCCTTTGATTTTATGGAAAATATTTCACTTGATGGT 22390 Query 61894 AAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 || || |||||||| || ||| || || || |||||| Sbjct 22391 AAAACCAATTTTTTTGAAAAAAAGGTTGGGGAATATCAA 22429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397165035635600