Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq80992 134 4e-27 >seq80992 Length=11193 Score = 134 bits (148), Expect = 4e-27 Identities = 270/397 (68%), Gaps = 10/397 (3%) Strand=Plus/Minus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 |||||||| || | ||||| || || ||| ||| | || |||||||| ||||| | Sbjct 10099 TACCCAATTTTCTCAATCGAGGACGGGATGAGTGAAGATGATTGGGACGGCTGGAATCTT 10040 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 ||||| | | | |||| | ||| |||||| |||| || || || | ||||| || ||| Sbjct 10039 CTTACCGCAAGCATTGGAGATAAGGTTCAACTGGTCGGCGATGATCTGTTCGTGACAAAC 9980 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCTTATCAAAGTT 2700 ||| |||| | || |||| | | || |||| || | || ||| ||||||| Sbjct 9979 CCTGAGCGGCTTGCGACTGGCATTGAAAAGAACTCTGCAAATGCCATGCTTGTCAAAGTC 9920 Query 2701 AACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAA-----GAAG 2755 || |||||||| || | ||||| || | || | || ||||| | |||| Sbjct 9919 AATCAAATCGGCACACTCACTGAGACCCTACGTGCGGTTGATATGGCCCATCGTGCGAAG 9860 Query 2756 CTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTG 2815 | || ||| | || | || ||||| || || ||||| ||||| |||||||||| | Sbjct 9859 TT---TA-ACAAC-GTGATGTCGCACCGCTCTGGGGAAACAGAAGACACAACAATCGCCG 9805 Query 2816 ATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACC 2875 | |||| |||||||| || ||| ||||| || || || || | || || | || | Sbjct 9804 ACCTTGCCGTTGCAACAAATTGTGGACAAATCAAAACGGGATCTCTCTCTCGCTCAGATC 9745 Query 2876 GTATTGCTAAATACAACCAATTGCTTCGTATCGAAGA 2912 | |||| ||||||||||| | |||| |||||||| Sbjct 9744 GCCTTGCAAAATACAACCAGCTCATTCGGATCGAAGA 9708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155884298914260