Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013-
12-02] 24,393 sequences; 1,170,241,964 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq4621 159 6e-37
seq170 120 6e-25
seq235 114 2e-23
seq522 73.4 7e-11
>seq4621
Length=27846
Score = 159 bits (176), Expect = 6e-37
Identities = 196/262 (75%), Gaps = 12/262 (5%)
Strand=Plus/Minus
Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-----CTTTGCTCGAAT 120
|||| || || |||||||| ||||||||||| | ||||||||| ||| ||| ||||
Sbjct 13663 CCAGCACGTTCACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTACAACTTCGCTTGAAT 13604
Query 121 ACATTA-GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC 179
|| | |||||||||||| ||||||||| | ||| |||||||||||||||| | ||| |
Sbjct 13603 ACTGTGTGCATGGAATAATGGAATAGGACCT-CGGATCTATTTTGTTGGTTT-TCGGAAC 13546
Query 180 GCCG---TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAA 236
||| |||||||||||||| | | ||||| | ||||| || |||||||||
Sbjct 13545 CCCGAGGTAATGATTAATAGGAACGGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAA 13486
Query 237 ATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTA 296
|||||||||| ||||| || |||||||| || |||| | | |||||||
Sbjct 13485 ATTCTTGGATCGTCGCAAGACGGACAGAAGCGAAAGCATTTGCCAAAAACGCTTTCATTG 13426
Query 297 ATCAGTGAACGAAAGTTAGGGG 318
|||| ||||||||||||| ||
Sbjct 13425 ATCA-AGAACGAAAGTTAGAGG 13405
>seq170
Length=945555
Score = 120 bits (132), Expect = 6e-25
Identities = 159/216 (74%), Gaps = 11/216 (5%)
Strand=Plus/Plus
Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99
||| ||||| || |||| || | ||| || ||||||||||| ||||||||||| |
Sbjct 315505 TGCTCTTCATTGAGTGTCGAGGTGGGCCGACACGTTTACTTTGAACAAATTAGAGTGCTT 315564
Query 100 AAAGCAGGC-----CTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCG 153
||||||||| || || |||||| | |||| |||| || |||||||| | |
Sbjct 315565 AAAGCAGGCTGAAATTTCGCCTGAATACTGTGTGCATAGAATGATGGAATAGGATCT-CT 315623
Query 154 GTTCTATTTTGTTGGTTTCTAGGA---CCGCCGTAATGATTAATAGGGATAGTCGGGGGT 210
|||||||||||||||||| | ||| ||| ||||||||||||||| | | |||||
Sbjct 315624 GTTCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAATGATTAATAGGAACGGATGGGGGC 315682
Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246
| ||||| || |||||||||||||||||||
Sbjct 315683 ATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGAT 315718
>seq235
Length=893873
Score = 114 bits (126), Expect = 2e-23
Identities = 152/208 (73%), Gaps = 16/208 (8%)
Strand=Plus/Plus
Query 45 TTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGC 104
|||| || |||| || | ||| | || ||||||||||| ||||||||||| | |||||
Sbjct 456909 TTCATTGAGTGTCGAGGTGGGCCGGCACGTTTACTTTGAACAAATTAGAGTGCTTAAAGC 456968
Query 105 AGGC-----CTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158
|||| ||| || |||||| | |||||||||||| |||||| || | ||||||
Sbjct 456969 AGGCTGAAACTTCGCCTGAATACTGTGTGCATGGAATAATGGAATAGAACCT-TGGTTCT 457027
Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218
||||||||||||| | ||| | || ||||||||||| ||||| | ||||
Sbjct 457028 ATTTTGTTGGTTT-TCGGAACCCCCGAATGATTAATA--------TGGGGGCATTCGTAT 457078
Query 219 TCAATTGTCAGAGGTGAAATTCTTGGAT 246
| | || || ||||||| ||||||||
Sbjct 457079 TGCGTCGTTAGGGGTGAAACTCTTGGAT 457106
>seq522
Length=410000
Score = 73.4 bits (80), Expect = 7e-11
Identities = 104/144 (72%), Gaps = 7/144 (5%)
Strand=Plus/Minus
Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99
||| || || || |||| || | || || || ||||||||||| |||||||||| |
Sbjct 48834 TGCTCTACATTGAGTGTCGAGGTGGGCTAGCACGTTTACTTTGAACAAATTAGAGTACTT 48775
Query 100 AAAGCAGGC-----CTTTGCTCGAAT-ACATTAGCATGGAATAATAGAATAGGACGTGCG 153
| ||||| ||| || |||| | | |||| || ||||| |||| ||| | ||
Sbjct 48774 GGAACAGGCTTAAACTTCGCCTGAATAATGTGTGCATAGAGTAATAAAATATGACCT-CG 48716
Query 154 GTTCTATTTTGTTGGTTTCTAGGA 177
|||||||||||||||||| | |||
Sbjct 48715 GTTCTATTTTGTTGGTTTTTCGGA 48692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914976755264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |