Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq4621 159 6e-37 seq170 120 6e-25 seq235 114 2e-23 seq522 73.4 7e-11 >seq4621 Length=27846 Score = 159 bits (176), Expect = 6e-37 Identities = 196/262 (75%), Gaps = 12/262 (5%) Strand=Plus/Minus Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-----CTTTGCTCGAAT 120 |||| || || |||||||| ||||||||||| | ||||||||| ||| ||| |||| Sbjct 13663 CCAGCACGTTCACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTACAACTTCGCTTGAAT 13604 Query 121 ACATTA-GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC 179 || | |||||||||||| ||||||||| | ||| |||||||||||||||| | ||| | Sbjct 13603 ACTGTGTGCATGGAATAATGGAATAGGACCT-CGGATCTATTTTGTTGGTTT-TCGGAAC 13546 Query 180 GCCG---TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAA 236 ||| |||||||||||||| | | ||||| | ||||| || ||||||||| Sbjct 13545 CCCGAGGTAATGATTAATAGGAACGGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAA 13486 Query 237 ATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTA 296 |||||||||| ||||| || |||||||| || |||| | | ||||||| Sbjct 13485 ATTCTTGGATCGTCGCAAGACGGACAGAAGCGAAAGCATTTGCCAAAAACGCTTTCATTG 13426 Query 297 ATCAGTGAACGAAAGTTAGGGG 318 |||| ||||||||||||| || Sbjct 13425 ATCA-AGAACGAAAGTTAGAGG 13405 >seq170 Length=945555 Score = 120 bits (132), Expect = 6e-25 Identities = 159/216 (74%), Gaps = 11/216 (5%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||||| || |||| || | ||| || ||||||||||| ||||||||||| | Sbjct 315505 TGCTCTTCATTGAGTGTCGAGGTGGGCCGACACGTTTACTTTGAACAAATTAGAGTGCTT 315564 Query 100 AAAGCAGGC-----CTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCG 153 ||||||||| || || |||||| | |||| |||| || |||||||| | | Sbjct 315565 AAAGCAGGCTGAAATTTCGCCTGAATACTGTGTGCATAGAATGATGGAATAGGATCT-CT 315623 Query 154 GTTCTATTTTGTTGGTTTCTAGGA---CCGCCGTAATGATTAATAGGGATAGTCGGGGGT 210 |||||||||||||||||| | ||| ||| ||||||||||||||| | | ||||| Sbjct 315624 GTTCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAATGATTAATAGGAACGGATGGGGGC 315682 Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 | ||||| || ||||||||||||||||||| Sbjct 315683 ATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGAT 315718 >seq235 Length=893873 Score = 114 bits (126), Expect = 2e-23 Identities = 152/208 (73%), Gaps = 16/208 (8%) Strand=Plus/Plus Query 45 TTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGC 104 |||| || |||| || | ||| | || ||||||||||| ||||||||||| | ||||| Sbjct 456909 TTCATTGAGTGTCGAGGTGGGCCGGCACGTTTACTTTGAACAAATTAGAGTGCTTAAAGC 456968 Query 105 AGGC-----CTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 |||| ||| || |||||| | |||||||||||| |||||| || | |||||| Sbjct 456969 AGGCTGAAACTTCGCCTGAATACTGTGTGCATGGAATAATGGAATAGAACCT-TGGTTCT 457027 Query 159 ATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTAT 218 ||||||||||||| | ||| | || ||||||||||| ||||| | |||| Sbjct 457028 ATTTTGTTGGTTT-TCGGAACCCCCGAATGATTAATA--------TGGGGGCATTCGTAT 457078 Query 219 TCAATTGTCAGAGGTGAAATTCTTGGAT 246 | | || || ||||||| |||||||| Sbjct 457079 TGCGTCGTTAGGGGTGAAACTCTTGGAT 457106 >seq522 Length=410000 Score = 73.4 bits (80), Expect = 7e-11 Identities = 104/144 (72%), Gaps = 7/144 (5%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| || || || |||| || | || || || ||||||||||| |||||||||| | Sbjct 48834 TGCTCTACATTGAGTGTCGAGGTGGGCTAGCACGTTTACTTTGAACAAATTAGAGTACTT 48775 Query 100 AAAGCAGGC-----CTTTGCTCGAAT-ACATTAGCATGGAATAATAGAATAGGACGTGCG 153 | ||||| ||| || |||| | | |||| || ||||| |||| ||| | || Sbjct 48774 GGAACAGGCTTAAACTTCGCCTGAATAATGTGTGCATAGAGTAATAAAATATGACCT-CG 48716 Query 154 GTTCTATTTTGTTGGTTTCTAGGA 177 |||||||||||||||||| | ||| Sbjct 48715 GTTCTATTTTGTTGGTTTTTCGGA 48692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914976755264