Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq28624 215 4e-51 seq6 149 5e-31 >seq28624 Length=432676 Score = 215 bits (238), Expect = 4e-51 Identities = 1142/1801 (63%), Gaps = 47/1801 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||| || || || || || || | || |||| | ||| ||||| || || Sbjct 59689 ATCTACAGTGAATTGAATGGCGTTTGCGGCGGGTTTCGTCCGCAAATAATACATTCCAGT 59630 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 || | || |||||| | |||||| || |||| ||||| | ||||| ||||| Sbjct 59629 TTTCAAACCCATCTTCCAAGCGTGGAAATGAATTGATGTCAATTTACCGTAATTTGGCTC 59570 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || || || || || ||||| || || |||||||| || ||| | ||||||||||| Sbjct 59569 AGCAACGTGAATGTTAAACGATTGGCTTTGATCGATAAAAGCACCTCTGTCTGCAGCCAT 59510 Query 65257 GTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAAT 65316 | ||| || | ||||||||||| || || ||||| || | | || | Sbjct 59509 CTGAATTGTAGTTTTGACTGATATCTCCCATACTGTTTTGTATAGCTCCCTGATATCTTT 59450 Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGA-CGTGCAATAATGCGATTACGCATCG 65375 || || ||||| | || | || ||| | ||| ||| || |||| ||| Sbjct 59449 CGGTATACTTTCAATATTTTGAATGGAGCCATTATTGTG-AATTATAAGATTCTTCATAT 59391 Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 || ||||| | | | | || | ||| | || |||| | ||| |||| Sbjct 59390 CGTCATCCCACAGCTCGGCCTGTGTCAAATCTCGAAGAAGATGGTGATTTACGACCTGGA 59331 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 | ||||| || | || | || ||| || || || |||| || |||||||| ||| Sbjct 59330 ATTCGCCAGATAAAACTCTGCGCTGATATATATTTGAAGTGAACGGCTCAAAGGACTCAT 59271 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 |||| || |||||||| |||||||| || || ||||| ||||| | |||| || |||| Sbjct 59270 TGTTACCAAGAATTTGTGCAGTAGAAGCTGTAGGCATTGGAGCTAGTAACAGCGAATTTC 59211 Query 65556 GCAATCCGTTCATTTCAATGTTGT-GACGCAATTCGTCCCAGTTCCACATCGGTTTATCG 65614 || |||| || | || || | | | | || ||||||| ||| ||| | | Sbjct 59210 TTAAACCGTGTTTTGCTATTTTTTCTTTGAGAGTTGT-CCAGTTC--CATAGGTCCGTTG 59154 Query 65615 TCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACC---- 65670 || || ||||||||| | ||||| | || |||| || || ||| Sbjct 59153 GCGTTTTC----TCCCACATATCATATTGCAAAATACCCTTACTTGCAGGGCTACCTTCA 59098 Query 65671 GAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGC 65730 | | |||| ||| || | | | || | || |||||| | || | ||| | Sbjct 59097 TATG-AACT---GTATGGGCCATATTTTTCAGCTAATTCACAGCTTGCTTCTAATGCTCC 59042 Query 65731 AAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGG 65790 | ||||||| ||||| ||||| || | ||||||| || | || || || ||||| Sbjct 59041 ATAATAAATAGTCTCAAAAATTTGTTGGTTAAGTTTGATAGCTTTTTCACTTTCATACGG 58982 Query 65791 CATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATG 65850 || | ||| | ||||||| || || | |||||||| |||||||| || || | ||| Sbjct 58981 TATTCTCATTATAACAAAAGCATCAGCTAATCCTTGAACACCAATACCAATAGGTCTATG 58922 Query 65851 ACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATT 65910 | || ||||||| | | || ||||| |||||||| ||||| | || || || ||| Sbjct 58921 TCTCATATTGGAATTTTTTGCTTCAGGGACAGGGTAATAATTAACTTCAATGATTTTATT 58862 Query 65911 CAAATTGCGTGTCACCA-CATGCACGATACGTC--GCAATTGTTCGAAATCAAAATGTTT 65967 |||||| |||| | | | || | || || ||||| ||| || | | || ||| Sbjct 58861 CAAATTTTGTGTGATGATCTTG---GTGACTTCTTTCAATTTTTCAAAGTTATAAGATTT 58805 Query 65968 AGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCA 66027 | | ||| | || ||| | || | |||| |||||| | ||||| Sbjct 58804 --GTC-TTCG---TTTACG-----AACATATTT----AAAGCAATAGATGCTAAATTGCA 58760 Query 66028 GACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCG 66087 || |||| || |||| | | || || || |||||||| || || ||||| ||||| Sbjct 58759 CACTGCTACTTCATCAGAATCAGTGTATTCTACAATTTCCGTACAGAGATTGCTGCATTT 58700 Query 66088 TATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTA 66147 || ||||| ||||| ||||| || ||||| | ||||| | || ||||| | ||| | Sbjct 58699 AATAGTGCCTAAATTTTGTTGGTTGCTCTTTCTGTTGCAAGAGTCTTTGTAAAGCATAAA 58640 Query 66148 CGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC 66207 || ||||| || || ||||| | |||| || || | ||| | | | ||| | | Sbjct 58639 TGGTGTGCCAGTTTCCACTTGTGCTTCAACAATAGCTTTCCACAAAATTTGAGCCCT-AA 58581 Query 66208 CGTACGT-ACCGCCCTACCTTTGC--GTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTC 66264 | | | | || || |||| | ||| || | ||| || || | || || ||| Sbjct 58580 CTTGCTTGACAAATCT--CTTTTCTTCTTCATATTTTTCATAAAGCTTCTCAAATTCTTC 58523 Query 66265 ACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATC 66324 ||||| || | |||| ||||| | ||||||||||| || ||||| ||| Sbjct 58522 CCCCCAACAGTCTGCAAGACCGGGACAGTCATGTGGACACATGAGGCTCCAATTCTCATT 58463 Query 66325 CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGC 66384 || ||| || | ||| || || || || |||||||| || || || || || | || Sbjct 58462 CTTTTCAACTCTTTTCATGAACAGGTCTGGGATCCAGAGAGCATAAAACAGTTCTCTGGC 58403 Query 66385 TCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCAT 66443 ||| || || | || ||| || || || || | || || || | || || | Sbjct 58402 ACGTACTTCTTCCTTACCAGTG-TTCTTTTTTAAATCCAAAAATTCGAATACATCAGCGT 58344 Query 66444 GCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGT 66503 |||| ||||| ||||||||||| || | || |||||| |||||| || || || | Sbjct 58343 GCCAGGGTTCTAGGTAGATGGCAAAAGCTCCAGGACGTTTATTGCCACCCTGATCAACAT 58284 Query 66504 AGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGG 66563 | | || || ||| | || |||||||| || || || || ||||| ||||| | Sbjct 58283 ATCTTGCTGTGTTATTGTACACCCGCAACATGGGAACAAGACCATTAGAAACACCATTTG 58224 Query 66564 TGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGG 66623 | || | ||| | ||| || | ||| || |||| || || || || || | Sbjct 58223 TTCCAGCAATGTAAGTACCTTTAGCTCTTATGCAATGGACATGAAGTCCTATGCCTCCAG 58164 Query 66624 CCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCAC 66683 | | ||| || || ||||| | || ||| | || || ||||| ||| Sbjct 58163 CAGACTTAGAAATCAATGCACATTGCTTCAATGTGTCATAGATACCTTCAATACTATCAT 58104 Query 66684 CCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGA 66743 | || || | | | | | || || ||||| ||| || || || || || || | Sbjct 58103 CTTTCATAGCAATCAAGAAACAAGAGGATAGTTGTGGTCGTGGAGTAGCAGCAGAAAAAA 58044 Query 66744 GGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAG 66803 | || || | ||||| || ||||| | || | | ||||| || | || | | Sbjct 58043 GTGTAGGACTGGCGTGTGTGAAGTATTTTTCTGATAATAAGTTGTATGTATTAATTGCTG 57984 Query 66804 CATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGTT 66863 ||||||| | ||| |||||||| || | | | |||||| || | || ||| || |||| Sbjct 57983 CATCAATATCTTCTCCATGAATTCCAATAGAAACTCGCATAAGCATGTGTTGGGGACGTT 57924 Query 66864 C 66864 | Sbjct 57923 C 57923 >seq6 Length=1691400 Score = 149 bits (164), Expect = 5e-31 Identities = 144/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 61192 CATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT 61251 || ||||| || ||||| ||||| |||||||| || || ||||| || || ||||||||| Sbjct 1115938 CACTTCATCAAGCATGTATTGGCCTTCTTTGCTGCATCAGACGGCATTGTAAATGAGAAT 1115879 Query 61252 TTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTC 61311 || | || || ||| | ||||| |||||||| | || ||| | ||||||||||| ||| Sbjct 1115878 CTAGTTGAGCGCTTCTCTCAGGAAGTGCAAGTAACTGAAGCGAGATGTTTCTACGGTTTC 1115819 Query 61312 CAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATC 61371 || |||||||||||||||||||| || || ||||| | ||||| || || || ||| Sbjct 1115818 CAAATTGCCATGGAGAATGTCCATTCTGAAATGTATTCCCTGCTCATTGACACATATATC 1115759 Query 61372 AGGGA 61376 || || Sbjct 1115758 AGAGA 1115754 Score = 122 bits (134), Expect = 7e-23 Identities = 161/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 ||||||||| | || || | ||| |||||| ||| || || |||||| | | ||| Sbjct 1115370 TTCAATGCCGTTGAAACCCTGCCGTGCGTGAAGAAGAAGGCAGACTGGGCCCTGCAGTGG 1115311 Query 61459 ATCACCAGTACAACGGCTACATTTGGTGAACG-ATTGCTGGCATTTGCGGTGGTCGAGGG 61517 || |||| | | || ||||| || || || |||| | |||||||| | || ||||| Sbjct 1115310 ATAGCCAGCAAGTCTGCAACATTCGGCGAGCGCATTG-TCGCATTTGCTGCTGTAGAGGG 1115252 Query 61518 TGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCC 61577 | |||||| ||| ||||| |||| |||||| ||||||||||||| || ||||| Sbjct 1115251 CATCTTTTTCTCTGGCAGTTTTGCGTCAATATTTTGGCTGAAGAAACGTGGTCTCATGCC 1115192 Query 61578 CGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 || |||| ||||||||||| ||||| || || || |||| Sbjct 1115191 TGGATTGACTTTCAGCAATGAATTGATTTCTCGGGATGAGG 1115151 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || ||||| || |||||||| | |||||||| ||||| ||| || |||| |||||| Sbjct 1116481 GACAATCCACGCCGTTTCGTCATCTTCCCCATTCAGTATCCGGACATCTGGCAAATGTAC 1116422 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAA 61151 |||||||| || ||||| || ||||| || || || || || || || || Sbjct 1116421 AAAAAGGCCGAGGCTTCGTTTTGGACTGTCGAAGAAGTTGACTTATCTAA 1116372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397422750643280