Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1630659 194 3e-47 seq1453593 104 4e-20 seq1663180 93.3 8e-17 seq1215871 84.2 4e-14 seq887389 80.6 5e-13 seq1451171 75.2 2e-11 >seq1630659 Length=1821 Score = 194 bits (214), Expect = 3e-47 Identities = 195/248 (79%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACATTAGCATG 131 |||||||||||||||||||||||| |||||||| || | || ||||| ||||| Sbjct 1031 TTTTACTTTGAAAAAATTAGAGTGCTCAAAGCATGCGTGACGCATGAATAATGGTGCATG 972 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGAT 190 ||||||| ||||||||| | |||||||||||||||||||| | || || |||||||| Sbjct 971 GAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCGGAACACGAGGTAATGAT 913 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| || |||||| | ||||| | |||||||||||||||||| Sbjct 912 TAAGAGGGACAGACGGGGGCATTCGTATTGCGACGCTAGAGGTGAAATTCTTGGACCGTC 853 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||||||||||||||| || ||||| |||||| ||||||||| |||||||| Sbjct 852 GCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTCCATTAATCA-AGAACGAAA 794 Query 311 GTTAGGGG 318 ||||| || Sbjct 793 GTTAGAGG 786 >seq1453593 Length=859 Score = 104 bits (114), Expect = 4e-20 Identities = 203/295 (69%), Gaps = 19/295 (6%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||| | | |||| ||| | ||| | || ||||| ||||| |||| |||||| || Sbjct 496 TGCTCTTCGCCGAGTGTCCCGCGCGGCCGGCACGTTTACCTTGAACAAATAAGAGTGCTC 437 Query 100 AAAGCAGGC------------CTTTGCTCGAATACATTA--GCATGGAATAATAGAATAG 145 || |||||| || ||| |||| | || | |||||||||||| || || Sbjct 436 AAGGCAGGCTACTCTTCAAACCTATGCCCGAA-AGATAACTGCATGGAATAATGAAAAAG 378 Query 146 GACGTGCGGTTCTATTT-TGTTGGTTTCTAGG-ACCGCCGTAATGATTAATAGGGATAGT 203 || | |||| |||| || | | ||| || |||| ||||||| || || || || Sbjct 377 GATCT-CGGTCTCATTTCTGATTGGCTCTGGGGACCGAGATAATGATAAAAAGAGACTGT 319 Query 204 CGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTA 263 |||||| || ||| | | |||||||||||||| || | ||| ||| | Sbjct 318 CGGGGGCATCCGTACTACGACGCGAGAGGTGAAATTCTATGACCGTCGTAGGACGAACAA 259 Query 264 CTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | |||||||| || ||||| |||| |||||| |||| ||||||||||||| || Sbjct 258 CAGCGAAAGCATTTGCCAAGAATGTCTTCATTGATCA-AGAACGAAAGTTAGAGG 205 >seq1663180 Length=5304 Score = 93.3 bits (102), Expect = 8e-17 Identities = 203/302 (67%), Gaps = 24/302 (8%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||||| | ||| ||| | ||| | || ||| |||| |||| |||||| || Sbjct 2926 TGCTCTTCACCGAGTGCCCCGCGTGGCCGACAATTACACTGTGAATAAATCAGAGTGCTC 2985 Query 100 AAAGCAGGCCTTT---------GCTCGAATACATTAGCATGGAATAATAGAATAGGAC-- 148 ||||||||| || || |||| |||||| || ||||| ||||| Sbjct 2986 AAAGCAGGCTATTAAGAATAACGCCTGAATGGTGGTGCATGGTATGTTAGAAAAGGACCT 3045 Query 149 --GTGCGGTTCT-ATTTTGTT------GGTTTCT---AGGACCGCCGTAATGATTAATAG 196 || | ||||| ||||| | ||| | | || ||| |||||||||||| | Sbjct 3046 CGGTTCTGTTCTCATTTTCTGTCTATCGGTCTTTTAAAGACCCGAGGTAATGATTAATGG 3105 Query 197 GGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGA 256 | |||||| | |||||| | |||||||||||||||||| |||| Sbjct 3106 AAGCGGACGGGGGCATTAGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCGTCGCAAGA 3165 Query 257 CTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGG 316 ||||||||||||||||| | ||||| | | |||||||||||| ||||||||||||| Sbjct 3166 CTAACTACTGCGAAAGCAATTGCCAAGAACGCTTTCATTAATCA-AGAACGAAAGTTAGA 3224 Query 317 GG 318 || Sbjct 3225 GG 3226 >seq1215871 Length=592 Score = 84.2 bits (92), Expect = 4e-14 Identities = 74/91 (81%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 228 AGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATG 287 |||||||||||||||||| ||||||||||||||||||||| | ||||| | | Sbjct 589 AGAGGTGAAATTCTTGGACCGTCGCAAGACTAACTACTGCGAAAGCAATTGCCAAGAACG 530 Query 288 TTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||| ||||||||||||| || Sbjct 529 CTTTCATTAATCA-AGAACGAAAGTTAGAGG 500 >seq887389 Length=454 Score = 80.6 bits (88), Expect = 5e-13 Identities = 100/136 (74%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 |||||||||||| | | |||||| | |||||| | ||||||||||||||| Sbjct 427 GTAATGATTAATGGAAGCGGACGGGGGCATTAGTATTGCGGCGCGAGAGGTGAAATTCTT 368 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 ||| ||||||||||||||||||||| ||||| | | |||||| ||||| Sbjct 367 GGACCGTCGCAAGACTAACTACTGCGAAAGCAAGTGCCAAGAACGCTTTCATGAATCA-A 309 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||||| || Sbjct 308 GAACGAAAGTTAGAGG 293 >seq1451171 Length=854 Score = 75.2 bits (82), Expect = 2e-11 Identities = 72/87 (83%), Gaps = 4/87 (5%) Strand=Plus/Minus Query 230 AGGTGAAATTCTTGGATTTATTG-AAGACTAACTACTGCGAAAGCGTTCACCAAGG-ATG 287 ||||||||||||||||| || | ||||||||||||||| ||||| | |||||| || Sbjct 653 AGGTGAAATTCTTGGATC-ATAGCAAGACTAACTACTGCAAAAGCAATTGCCAAGGAATA 595 Query 288 TTTTCATTAATCAGTGAACGAAAGTTA 314 |||||||||||| | |||||||||| Sbjct 594 ATTTCATTAATCA-AGTACGAAAGTTA 569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899975135488