Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1190 206 1e-50 seq1236 154 6e-35 >seq1190 Length=154610 Score = 206 bits (228), Expect = 1e-50 Identities = 195/244 (80%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 446 GCGAGTGTTTGGGTGTC-AAACCCGTGCGCGTAATGAAAGTGAA---CGGAGGTGGGAAC 501 |||||| || |||||| ||||||| |||||||||||||||| | || ||| | Sbjct 147574 GCGAGTATTAGGGTGTTGAAACCCGAATGCGTAATGAAAGTGAATTTCAGATGTG---AT 147518 Query 502 CCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGG--ATGGATTTGAGTAAGAGCA 559 ||| ||| |||| |||||||| || ||| || | | || |||||||||||| Sbjct 147517 CCGCAAGG-TGCAACATCGACCAGTCTGGATCATTTATGTGAAGGTACTGAGTAAGAGCA 147459 Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619 |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 147458 AGTATGTTAGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGTCAGAGGAAAC 147399 Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 |||| |||| ||||| |||||||||| |||||||||||||||| ||| ||||||||||| Sbjct 147398 TCTGATGGAAGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTAGAATCTGGGTATAGGG 147339 Query 680 GCGA 683 |||| Sbjct 147338 GCGA 147335 Score = 181 bits (200), Expect = 4e-43 Identities = 143/170 (84%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | ||||||||||||||||||||||||||| || |||| |||||||| | ||||| | Sbjct 148082 TTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAGG 148023 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||| | ||||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 148022 CTAAATATAAGTGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGAACT 147963 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 ||| ||| |||||| || || ||||||||||| |||||||||| || ||| Sbjct 147962 TTGAAAATAGAGTT-AACAGTACGTGAAATTGCTGAAAGGGAAACGTTTG 147914 Score = 84.2 bits (92), Expect = 9e-14 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 ||||| ||| | ||| | |||||| ||||||||| ||||||||||||||||||||||| Sbjct 147705 GGATGTTGGTGAAATAACTTTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACA 147646 Query 441 TCTATGCGAGTGTTTGGGTGT 461 | ||||||| || |||||| Sbjct 147645 TGCTTGCGAGTATTAGGGTGT 147625 >seq1236 Length=109634 Score = 154 bits (170), Expect = 6e-35 Identities = 106/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||||||||||||||||||||||||||||| || ||| |||||||||||||||||||| Sbjct 31532 TGTTGGGACCCGAAAGATGGTGAACTATGCTTGCGCAGGTTGAAGCCAGAGGAAACTCTG 31473 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||||||| ||||||||||||||| || | || |||||||||||| Sbjct 31472 GTGGAGGACCGAAGCGGTTCTGACGTGCAAATCGATCGCCAGACGTGAGTATAGGGGCGA 31413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078523510700