Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1190 302 7e-80 seq1236 170 3e-40 >seq1190 Length=154610 Score = 302 bits (334), Expect = 7e-80 Identities = 224/260 (86%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 149255 TACTCGCTGGCTTGGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 149314 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC--A 118 ||||||||||||||| ||||||||| || | ||||||||||||||||||| | Sbjct 149315 ACCTGTTATTGCCTCCAACTTCCATCAACTAAATATTAATAGTCCCTCTAAGAAGCTTTA 149374 Query 119 GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | || | | ||| | | ||||||||||||| ||||||||||||||||||| ||| Sbjct 149375 GTCAGC---CGTAGCCAACCAAGCTATTTAGCAGGAGAAGGTCTCGTTCGTTATCGCAAT 149431 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||| ||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| Sbjct 149432 TAAGCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAACCACAAAATCAA 149491 Query 239 GAAAGAGCTATCAATCTGTC 258 |||| ||||||||||||||| Sbjct 149492 GAAAAAGCTATCAATCTGTC 149511 >seq1236 Length=109634 Score = 170 bits (188), Expect = 3e-40 Identities = 108/117 (92%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| || |||||||||||||||||||||||||||||||||| |||||||| Sbjct 34613 CTAGTTAGCAGGCCAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 34672 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| |||||||||||||||| |||||||||| Sbjct 34673 ACTAAGAACGGCCATGCACCACCAACCACCGAATCAAGAAAGAGCTCTCAATCTGTC 34729 Score = 89.7 bits (98), Expect = 8e-16 Identities = 91/115 (79%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || ||| || ||| |||| |||| ||||| | ||||||||||||||||||| Sbjct 34409 TACTCGCTGAAACCGCCATTGTCGCGCACGTGTGGCCCCGGACATCTAAGGGCATCACAG 34468 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 ||||||||||| ||| || ||| |||| || || | |||||||||||||| Sbjct 34469 ACCTGTTATTG-CTC-AATTTCGTGCGGCTATAA-CCGCTTGTCCCTCTAAGAAG 34520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796268670354