Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq14843 327 2e-87 seq1190 174 3e-41 seq22755 125 1e-26 seq49395 113 8e-23 seq6451 84.2 4e-14 >seq14843 Length=30539 Score = 327 bits (362), Expect = 2e-87 Identities = 235/270 (87%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 25080 TCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 25021 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| ||||||||| || | | |||| |||||||| Sbjct 25020 TTAGTGGGTGAACAATCCAACGCTTTGTGAATTCTGCGTCACAACGCTAGGGAGAGCCGA 24961 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||| Sbjct 24960 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTAGTCGCCACAAGCCAGTTATCC 24901 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCA-------AATTTCGAGGGACTAAAGGAT 263 ||||||||||||||||| ||||||| || ||| |||||| | | ||||||| Sbjct 24900 CTGTGGTAACTTTTCTGACACCTCTTGCTTCAAACTCGGAATTTC-AAAATCAAAAGGAT 24842 Query 264 CGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||| |||||| ||| ||||||| Sbjct 24841 CGATAGGCCACGCTTTCACGGTCTGTATTC 24812 >seq1190 Length=154610 Score = 174 bits (192), Expect = 3e-41 Identities = 98/99 (99%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 145299 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAT 145358 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||||||||||||||||||||||||||||||||||||| Sbjct 145359 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 145397 Score = 80.6 bits (88), Expect = 5e-13 Identities = 44/44 (100%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 252 GGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 145448 GGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 145491 >seq22755 Length=13346 Score = 125 bits (138), Expect = 1e-26 Identities = 80/87 (92%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 67 TCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTG 126 ||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| Sbjct 7715 TCTAAACCCAGCTCACGTTCCCTTTTGATGGGTGAACAATCCAACGCTTGGCGAATTCTG 7656 Query 127 CTTCGGTATGATAGGAAGAGCCGACAT 153 ||||| |||||||||||||||||||| Sbjct 7655 CTTCGCAATGATAGGAAGAGCCGACAT 7629 >seq49395 Length=5151 Score = 113 bits (124), Expect = 8e-23 Identities = 81/92 (88%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTC-ATCAGTAGGGTAAAACTAACCTGTCTC 59 ||||||| ||||||| |||| | || || ||||||||||||||||||||||||||| Sbjct 808 TACTAAGTTGAATTACTATTGCGATAACCCTCCATCAGTAGGGTAAAACTAACCTGTCTC 867 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 | |||||||||||||||||||||||||||||| Sbjct 868 ACGACGGTCTAAACCCAGCTCACGTTCCCTAT 899 >seq6451 Length=56802 Score = 84.2 bits (92), Expect = 4e-14 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || |||||| ||||||| |||||||||| |||| |||||| |||| ||||||||||| Sbjct 4307 TCGTCAGTAACGTAAAACCAACCTGTCTCTTGACAGTCTAAGCCCATTTCACGTTCCCTT 4366 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGG 141 || |||| || | |||| || | || |||||||||| ||||| || Sbjct 4367 TTGGTGGTTGGATAATCAAAGGACAGGCGGATTCTGCTTCTCAATGATTGG 4417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853811882304