Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_007902.1 Length=52162 Score E Sequences producing significant alignments: (Bits) Value seq25848 118 4e-22 >seq25848 Length=116905 Score = 118 bits (130), Expect = 4e-22 Identities = 334/504 (66%), Gaps = 23/504 (5%) Strand=Plus/Minus Query 23597 TCACGGGTACGAATGTGCTTCTGCACCAGTTCCAGCAGCGCCACCCGGCGATGGGTCAGG 23656 ||||| |||||| ||||| || | ||| ||||| | |||| || || || || | Sbjct 95135 TCACGCTGACGAATATGCTTTTGAAGCAGCTCCAGGATGGCCATGCGACGGTGCTGCATG 95076 Query 23657 ATTTCGTCATCCGGTATTGCAGTGATATCGACCAGCGGAAATGCCTGATGATAAACCGTG 23716 ||||| ||||| || || |||||||| ||||| || || | | ||||| ||| Sbjct 95075 ATTTCATCATCTGGGATGATTGTGATATCCACCAGTGGGAAGTTTTCACCATAAA--GTG 95018 Query 23717 GCCGCCAAT--TCTGGCTCAGCAAAACAGTCCAGACAGCGCGTGCTGTACGGATACGGC- 23773 ||| | |||||| |||| ||||| |||| | | ||||| || || Sbjct 95017 CCCGGGCGTGGTCTGGCATTTCAAACTCATCCAGCCAGCACATCGAATACGGGTAAGGGC 94958 Query 23774 -GACGTGGTGCCGTGGTAAAACAGCAGCGGAATGACCACCGGTAGCTGATCGTTGCCCTG 23832 ||| | |||| |||||||| || | || || |||| |||||| | | || |||| Sbjct 94957 TGACTT--TGCCCTGGTAAAAAAGAACGGGGATCACCAAAGGTAGC-GTTTTATGACCTG 94901 Query 23833 T-TCTAGATGCCGCTGCATCGCGGCGACCGCATACCGTAGCAATCGAAACGCCATCAGCT 23891 || ||||| || |||||||| || | ||||| | | || ||||||||||| ||| Sbjct 94900 CATCGAGATGACGTTGCATCGCCGCAATAGCATATCTCATCAGGCGAAACGCCATGTGCT 94841 Query 23892 TTTCCGGGCGGCTCTGGTGCTCTATCAGACAGTAGACGTAACCATCA---TGGCCCGTCG 23948 | || || ||| || || || || || || || || || |||||| | |||| Sbjct 94840 TATCTGGCGTGCTTTGATGTTCAATAAGGCAATACACATAGCCATCACTATTTCCCGCT- 94782 Query 23949 TGGTCTTCATCGAGTAGAGCATATCCGAGCACT--GGCCCTTCAGGTCGTCTTCGATAAA 24006 |||| ||||| |||| ||| || | | || | ||| || |||||||| || Sbjct 94781 -----TTCAGGGAGTACAGCACATCGGAATAATACGGACG--CAGATCATCTTCGATGAA 94729 Query 24007 TGAGCCGGAAGCCATCGCCAATGTGCCGAAATCGCAGCGCTTACGCAGGTGCGGCGGCAG 24066 || || || |||| | ||| || ||||| || | || || ||| ||||||| Sbjct 94728 AGATCCCGACGCCAGCTGCAACGTATTTAAATCACAAAGTTTGCGAAGGGCTGGCGGCAA 94669 Query 24067 ATGGATTTCCAGAAAGTCCCGAGC 24090 ||| || |||| |||||||||||| Sbjct 94668 ATGAATGTCCAAAAAGTCCCGAGC 94645 Score = 95.1 bits (104), Expect = 4e-15 Identities = 324/498 (65%), Gaps = 13/498 (3%) Strand=Plus/Plus Query 23597 TCACGGGTACGAATGTGCTTCTGCACCAGTTCCAGCAGCGCCACCCGGCGATGGGTCAGG 23656 ||||| |||||| ||||| || | ||| ||||| | |||| || || || || | Sbjct 75851 TCACGCTGACGAATATGCTTTTGAAGCAGCTCCAGGATGGCCATGCGACGGTGCTGCATG 75910 Query 23657 ATTTCGTCATCCGGTATTGCAGTGATATCGACCAGCGGAAATGCCTGATGATAAACCGTG 23716 ||||| ||||| || || |||||||| ||||| || || | | ||||| ||| Sbjct 75911 ATTTCATCATCTGGGATGATTGTGATATCCACCAGTGGGAAGTTTTCACCATAAA--GTG 75968 Query 23717 GCCGCCAAT--TCTGGCTCAGCAAAACAGTCCAGACAGCGCGTGCTGTACGGATACGGC- 23773 ||| | |||||| |||| ||||| |||| | | ||||| || || Sbjct 75969 CCCGGGCGTGGTCTGGCATTTCAAACTCATCCAGCCAGCTCATCGAATACGGGTAAGGGC 76028 Query 23774 -GACGTGGTGCCGTGGTAAAACAGCAGCGGAATGACCACCGGTAGCTGATCGTTGCCCTG 23832 ||| | |||| |||||||| || | || || |||| ||||| | | ||||| | Sbjct 76029 TGACCT--TGCCTTGGTAAAAGAGAACGGGGATCACCAAAGGTAGA-GTTTTATGCCCCG 76085 Query 23833 T-TCTAGATGCCGCTGCATCGCGGCGACCGCATACCGTAGCAATCGAAACGCCATCAGCT 23891 || ||||| || ||||| | |||| ||||| | | | || |||||||| | | Sbjct 76086 CATCAAGATGACGTTGCATTGTCGCGATGGCATATCTCATGAGGCGGAACGCCATGTGTT 76145 Query 23892 TTTCCGGGCGGCTCTGGTGCTCTATCAGACAGTAGACGTAACCATCATGGCCCGTCGTGG 23951 | || || ||| || || || || || || || || || || |||| | | || Sbjct 76146 TATCTGGTGTGCTTTGATGTTCGATGAGGCAATACACATAGCCGTCAT---CATTTCCGG 76202 Query 23952 TCTTCATCGAGTAGAGCATATCCGAGCACTGGCCCTTCAGGTCGTCTTCGATAAATGAGC 24011 |||| || || |||| || || | | | | |||||||||||||| || || | Sbjct 76203 CTTTCAGGGAATACAGCACGTCAGAATAATAGGACCGGAGGTCGTCTTCGATGAAAGATC 76262 Query 24012 CGGAAGCCATCGCCAATGTGCCGAAATCGCAGCGCTTACGCAGGTGCGGCGGCAGATGGA 24071 | ||||||| | || || | ||| || | ||||| | ||| |||||||||| Sbjct 76263 CAGAAGCCAGCTGCAGCGTATTTAGATCACACAGTTTACGTAACGACGGTGGCAGATGGA 76322 Query 24072 TTTCCAGAAAGTCCCGAG 24089 | ||||| ||||| |||| Sbjct 76323 TATCCAGGAAGTCGCGAG 76340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166660459670192