Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_007902.1
Length=52162
Score E
Sequences producing significant alignments: (Bits) Value
seq25848 118 4e-22
>seq25848
Length=116905
Score = 118 bits (130), Expect = 4e-22
Identities = 334/504 (66%), Gaps = 23/504 (5%)
Strand=Plus/Minus
Query 23597 TCACGGGTACGAATGTGCTTCTGCACCAGTTCCAGCAGCGCCACCCGGCGATGGGTCAGG 23656
||||| |||||| ||||| || | ||| ||||| | |||| || || || || |
Sbjct 95135 TCACGCTGACGAATATGCTTTTGAAGCAGCTCCAGGATGGCCATGCGACGGTGCTGCATG 95076
Query 23657 ATTTCGTCATCCGGTATTGCAGTGATATCGACCAGCGGAAATGCCTGATGATAAACCGTG 23716
||||| ||||| || || |||||||| ||||| || || | | ||||| |||
Sbjct 95075 ATTTCATCATCTGGGATGATTGTGATATCCACCAGTGGGAAGTTTTCACCATAAA--GTG 95018
Query 23717 GCCGCCAAT--TCTGGCTCAGCAAAACAGTCCAGACAGCGCGTGCTGTACGGATACGGC- 23773
||| | |||||| |||| ||||| |||| | | ||||| || ||
Sbjct 95017 CCCGGGCGTGGTCTGGCATTTCAAACTCATCCAGCCAGCACATCGAATACGGGTAAGGGC 94958
Query 23774 -GACGTGGTGCCGTGGTAAAACAGCAGCGGAATGACCACCGGTAGCTGATCGTTGCCCTG 23832
||| | |||| |||||||| || | || || |||| |||||| | | || ||||
Sbjct 94957 TGACTT--TGCCCTGGTAAAAAAGAACGGGGATCACCAAAGGTAGC-GTTTTATGACCTG 94901
Query 23833 T-TCTAGATGCCGCTGCATCGCGGCGACCGCATACCGTAGCAATCGAAACGCCATCAGCT 23891
|| ||||| || |||||||| || | ||||| | | || ||||||||||| |||
Sbjct 94900 CATCGAGATGACGTTGCATCGCCGCAATAGCATATCTCATCAGGCGAAACGCCATGTGCT 94841
Query 23892 TTTCCGGGCGGCTCTGGTGCTCTATCAGACAGTAGACGTAACCATCA---TGGCCCGTCG 23948
| || || ||| || || || || || || || || || |||||| | ||||
Sbjct 94840 TATCTGGCGTGCTTTGATGTTCAATAAGGCAATACACATAGCCATCACTATTTCCCGCT- 94782
Query 23949 TGGTCTTCATCGAGTAGAGCATATCCGAGCACT--GGCCCTTCAGGTCGTCTTCGATAAA 24006
|||| ||||| |||| ||| || | | || | ||| || |||||||| ||
Sbjct 94781 -----TTCAGGGAGTACAGCACATCGGAATAATACGGACG--CAGATCATCTTCGATGAA 94729
Query 24007 TGAGCCGGAAGCCATCGCCAATGTGCCGAAATCGCAGCGCTTACGCAGGTGCGGCGGCAG 24066
|| || || |||| | ||| || ||||| || | || || ||| |||||||
Sbjct 94728 AGATCCCGACGCCAGCTGCAACGTATTTAAATCACAAAGTTTGCGAAGGGCTGGCGGCAA 94669
Query 24067 ATGGATTTCCAGAAAGTCCCGAGC 24090
||| || |||| ||||||||||||
Sbjct 94668 ATGAATGTCCAAAAAGTCCCGAGC 94645
Score = 95.1 bits (104), Expect = 4e-15
Identities = 324/498 (65%), Gaps = 13/498 (3%)
Strand=Plus/Plus
Query 23597 TCACGGGTACGAATGTGCTTCTGCACCAGTTCCAGCAGCGCCACCCGGCGATGGGTCAGG 23656
||||| |||||| ||||| || | ||| ||||| | |||| || || || || |
Sbjct 75851 TCACGCTGACGAATATGCTTTTGAAGCAGCTCCAGGATGGCCATGCGACGGTGCTGCATG 75910
Query 23657 ATTTCGTCATCCGGTATTGCAGTGATATCGACCAGCGGAAATGCCTGATGATAAACCGTG 23716
||||| ||||| || || |||||||| ||||| || || | | ||||| |||
Sbjct 75911 ATTTCATCATCTGGGATGATTGTGATATCCACCAGTGGGAAGTTTTCACCATAAA--GTG 75968
Query 23717 GCCGCCAAT--TCTGGCTCAGCAAAACAGTCCAGACAGCGCGTGCTGTACGGATACGGC- 23773
||| | |||||| |||| ||||| |||| | | ||||| || ||
Sbjct 75969 CCCGGGCGTGGTCTGGCATTTCAAACTCATCCAGCCAGCTCATCGAATACGGGTAAGGGC 76028
Query 23774 -GACGTGGTGCCGTGGTAAAACAGCAGCGGAATGACCACCGGTAGCTGATCGTTGCCCTG 23832
||| | |||| |||||||| || | || || |||| ||||| | | ||||| |
Sbjct 76029 TGACCT--TGCCTTGGTAAAAGAGAACGGGGATCACCAAAGGTAGA-GTTTTATGCCCCG 76085
Query 23833 T-TCTAGATGCCGCTGCATCGCGGCGACCGCATACCGTAGCAATCGAAACGCCATCAGCT 23891
|| ||||| || ||||| | |||| ||||| | | | || |||||||| | |
Sbjct 76086 CATCAAGATGACGTTGCATTGTCGCGATGGCATATCTCATGAGGCGGAACGCCATGTGTT 76145
Query 23892 TTTCCGGGCGGCTCTGGTGCTCTATCAGACAGTAGACGTAACCATCATGGCCCGTCGTGG 23951
| || || ||| || || || || || || || || || || |||| | | ||
Sbjct 76146 TATCTGGTGTGCTTTGATGTTCGATGAGGCAATACACATAGCCGTCAT---CATTTCCGG 76202
Query 23952 TCTTCATCGAGTAGAGCATATCCGAGCACTGGCCCTTCAGGTCGTCTTCGATAAATGAGC 24011
|||| || || |||| || || | | | | |||||||||||||| || || |
Sbjct 76203 CTTTCAGGGAATACAGCACGTCAGAATAATAGGACCGGAGGTCGTCTTCGATGAAAGATC 76262
Query 24012 CGGAAGCCATCGCCAATGTGCCGAAATCGCAGCGCTTACGCAGGTGCGGCGGCAGATGGA 24071
| ||||||| | || || | ||| || | ||||| | ||| ||||||||||
Sbjct 76263 CAGAAGCCAGCTGCAGCGTATTTAGATCACACAGTTTACGTAACGACGGTGGCAGATGGA 76322
Query 24072 TTTCCAGAAAGTCCCGAG 24089
| ||||| ||||| ||||
Sbjct 76323 TATCCAGGAAGTCGCGAG 76340
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 166660459670192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |