Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq742 260 1e-64 seq6691 199 3e-46 >seq742 Length=196864 Score = 260 bits (288), Expect = 1e-64 Identities = 1193/1877 (64%), Gaps = 54/1877 (3%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||||||||| ||||| | || | ||| || || | || ||||| || ||| Sbjct 48918 TCAACGGTGAACTGGATAGCATTTACGGCAGGCTTTGTTCTCAAGTAATACATTCCAGTC 48859 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || | ||| ||| ||||||| || || || | | ||| | || || ||||| Sbjct 48858 TTCAAGCCCATCTTCCAGCCATAGAAGTGGATAGAAGTGAGCTTTCCGTAGTTGGGCTCT 48799 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 ||||| || || || || |||||||| || || || | || || || || ||||| Sbjct 48798 GCCACGTGTATGTTGAAGGACTGACTTTGGTCAATAAAGGCTCCTCGGTCGGCTGCCATC 48739 Query 65258 TCAATGA-TACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAAT 65316 | || | || || || || ||||| || |||||||| || | | | | Sbjct 48738 TTGATCAGTATTTTGTTG-GAAATTTCCCAAACTGTCTTGTAGAGATCTCTGATGTGCTT 48680 Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGACGT--GCAATAATGCGATTACGCATC 65374 || || || | || || | || || | || ||||| ||| |||| ||| Sbjct 48679 GGGTATTCTGTCCAGGTTTTGAATGGATCC--GTTGTTGGCAATGATGAGATTTTTCATG 48622 Query 65375 GACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGG 65434 || ||||||| | ||| | | || | | | || |||| | || ||| Sbjct 48621 TCGTCGTCCCACAAATCAGCCTCGGTCAAATCACGCAGTAGATGGTGATTCACAACCTGG 48562 Query 65435 AACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCA 65494 || || || |||| || | | | ||||||||||| |||| ||||||||||||||| Sbjct 48561 AATTCTCCAGACAAGACCCTTCTGGTGTAGATGTTGGAAGTGAAGGGTTCAAAGGATTCG 48502 Query 65495 GTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTT 65554 |||| |||| ||| ||||| || || || || |||||||| |||| | || ||||| Sbjct 48501 TTGTTTCCTAAAATCTGGGCGGTGGAGGCGGTAGGCATGGGTGCGAGAAGCAGCGAGTTC 48442 Query 65555 CGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATC- 65613 | | ||||| || | || || ||| | |||||||||||| ||| Sbjct 48441 CTGACTCCGTGTATCGCGATCTTAGCTTTCAAGGCAGCCCAGTTCCACAA------ATCT 48388 Query 65614 GTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAG 65673 || | | || | |||||| || | ||| || | || | ||| | || | || | Sbjct 48387 GTAGGCTTCTT-GTCCCACATCTCATATTGAAGAATCCCTTTGCTGACAGGACATCCTGG 48329 Query 65674 GAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAA 65733 | | | ||||| ||||||| || ||| || | || || | || || || | | Sbjct 48328 GTACGTCTCGTATGTACCCTCCTTCTCGGCCAGCTCGCAACTTGCTTCCAGAGCACCGTA 48269 Query 65734 ATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCAT 65793 ||| | ||||| || || || |||| || | || | || ||||| | |||| Sbjct 48268 ATACAATGTCTCAAATATTTGTTGATTCAGAAGCTGGGCTTTTTCACTCTCAAAAGGCAA 48209 Query 65794 ACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | ||| | |||||||| || ||||| ||||| | ||||||||||||||| || ||||| Sbjct 48208 TCTCATTAAGACAAAAGCATCTGCCAGGCCTTGTATTCCAATACCGATGGGGCGGTGACG 48149 Query 65854 CAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAA 65913 || || || ||| || || ||||||||||| | || | |||||||| ||||| Sbjct 48148 CATGTTCGATGTTCTAGCTTCTGGTACAGGGTAAAAGTTAACGTCGATAATTTTGTTCAA 48089 Query 65914 ATTGCGTGTCACCA-CATGC--ACGATACGTCGCAATTGTTCGAAATCAAAATGTTTAGG 65970 ||| || || | || ||||| | || | | ||| || || || ||| Sbjct 48088 ATTTTTAGTGACAGTCTTGGTTACGAT-CTTC--AGCTTTTCAAAGTCGAATACCTTATT 48032 Query 65971 ACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGAC 66030 | | |||||| | | || | ||| || | |||||||| Sbjct 48031 AT------------------CTACAAACATATTGACAGCGATAGAGGCCAAATTGCAGAC 47990 Query 66031 AGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTAT 66090 ||||| || || | || || || || ||||| ||||| || |||||||| || Sbjct 47989 AGCTACTTCATCTTTGGAAGTGTATTCAACTATTTCTGTGCAGAGGTTACTGCACTTAAT 47930 Query 66091 GGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGG 66150 || |||| ||| ||||| || ||||| || ||||| || |||||||||| |||||| || Sbjct 47929 AGTTCCCAGATTTTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGTACAGCATGTAGGG 47870 Query 66151 AGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGT 66210 || || || || ||||| || || |||||||| ||| | || | ||||| | | | Sbjct 47869 GGTTCCCGTTTCTACTTGAGATTCGATGATGGCCATCCACAAAGTCTGCGCCTTGATCTT 47810 Query 66211 A--CGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCC 66268 | || | | ||||| | |||||| || ||| || || || ||| ||| Sbjct 47809 CTTCTTA--GAACGACCTTCGGCTTCGTAGCGTGTGTACAGAGCCTCAAATTCTTCTCCC 47752 Query 66269 CATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGT 66328 || ||| | | ||| | ||| || ||||| || |||||| | | || Sbjct 47751 CAGCACTCGTGTAAGCCGGGAGCATCGTGGGGGCACATGAGACTCCAATCCTCGT--TGC 47694 Query 66329 TCT--ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTC 66386 ||| ||||| ||| || ||||| || ||||| | | ||||||| | || ||||| | Sbjct 47693 TCTCGACACGCTTCATGAACAGATCGGGGATCCACAAGCCGTAGAATAAGTCACGTGCAC 47634 Query 66387 GTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCC 66446 | ||||| | || ||| || |||||| | ||| ||||| ||||| || |||| Sbjct 47633 GAACTTCCTCCTTTCCAGTATTCTTTTTCAAGTCTAAGAATTCAAATATGTCCGCGTGCC 47574 Query 66447 ATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGC 66506 | || || | ||| || ||||| | || | ||| || || ||||| || |||| Sbjct 47573 ACGGCTCAACGTAAATAGCGAAAGCTCCGGGCCTCTTGTTTCCTCCCTGGTCTACATAGC 47514 Query 66507 GAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGC 66566 | || || ||| | ||||||| ||| || || | ||| || || || || || | Sbjct 47513 GGGCCGTGTTATTGTACACACGCAGCATGGGGACCAACCCATTGGAGACTCCGTTAGTAC 47454 Query 66567 CGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCG 66626 | ||||| ||| || || || || ||| |||| || || ||||| || || | Sbjct 47453 CCGCGATGTAGGAACCCTTGGCTCGGATGCAGTGTACATGAAGGCCGATACCTCCAGCAG 47394 Query 66627 TCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCT 66686 ||| || | ||||| | || || | | || || ||||| ||| | Sbjct 47393 ACTTGGAAACCAGGGCACACTGCTTCAGGGTGTCGTAGATCCCTTCAATACTATCATCGC 47334 Query 66687 TGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGG 66746 | |||| ||| ||| |||| ||| || || || ||| ||||| || ||||| || | Sbjct 47333 TCATGGCCAGTAGGAAGCAAGAAGACAGCTGAGGACGGGGCGTGGCTGCGGAGAATAGAG 47274 Query 66747 TGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCAT 66806 | || | ||||| || ||||| | |||| ||||| || || ||| | | || Sbjct 47273 TAGGGCTGGCGTGAGTGAAGTATTTCTCTGACAGAAGGTTGTAAGTTTCAATGGCTGAAT 47214 Query 66807 CAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAG---GTATTGAGGCCGTT 66863 |||||| ||| || || || |||| || || | ||| ||| || ||| || | || Sbjct 47213 CAATGTCTTCCCCGTGGATACCGA---CAGATACCCTCATGAGCATGTGTTGCGGTCTTT 47157 Query 66864 CGACCAGCCGATCCTT-GATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAG 66922 | || | | |||| ||| | || | || ||||| |||| ||| || | |||||| Sbjct 47156 CTACAA-CTTTCCCTTCGATCTTCAGCAGATATGAGCGCTCCAAGGTTTTAAATCCAAAG 47098 Query 66923 TACGAGTAATTGAAATC 66939 || ||||||||||| Sbjct 47097 TAGTTATAATTGAAATC 47081 >seq6691 Length=42033 Score = 199 bits (220), Expect = 3e-46 Identities = 358/518 (69%), Gaps = 9/518 (2%) Strand=Plus/Minus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 ||||| || | ||||| ||||| |||||| ||| || || |||||| | | ||| Sbjct 14451 TTCAACGCTGTGGAGACCCTACCGTGTGTGAAGAAGAAGGCAGACTGGGCCCTGCAGTGG 14392 Query 61459 ATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGT 61518 ||| ||| ||||| || || || || || || |||| || || || || || Sbjct 14391 ATCGGCAGCGACACGGCCACCTTCGGGGAGCGTGTGGTGGCCTTCGCTTGCGTAGAAGGA 14332 Query 61519 GTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCC 61578 | || ||| || |||||| | ||||||||| ||||||| ||||| || |||||| Sbjct 14331 ATCTTCTTCTCCGGCAGTTTTGCCTCCATCTTTTGGCTGAAGAAGCGTGGCCTCATGCCC 14272 Query 61579 GGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCT 61638 || ||||||||||||| |||||||| || || |||||||| | || || || ||||| Sbjct 14271 GGCTTGACCTTCAGCAACGAGTTGATCTCCCGAGACGAGGGTCTCCACTGCGACTTTGCC 14212 Query 61639 GTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATT 61698 | | ||||||| || | ||| | || | | | || || | || Sbjct 14211 TGCCTCATGTTCAAACACTTAGTACAGAAAC--CCAGCCCCGCA-CGAGTCCTAGCTATC 14155 Query 61699 GTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTC 61758 || || || || | || ||||| || ||||| || ||||| |||||||| ||| Sbjct 14154 GTCAAGGATGCTGTCATCATTGAACAAGAGTTTCTCACCGACGCCCTGCCCGTCAGACTA 14095 Query 61759 ATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG 61818 | |||||||| || | || ||||||||||||||||||||||| |||||||| || ||| Sbjct 14094 CTGGGCATGAACTGCGACCTGATGTCGCAGTATATTGAATTTGTGGCCGACCGGCTCTTG 14035 Query 61819 GTCGATTTGGG-TATG--AAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGAC 61875 || || |||| | || |||| ||| | || ||||| || ||||||||| Sbjct 14034 GTGGACCTGGGCTGTGCCAAGC---ACTACGGATCCAAGAACCCCTTCAGCTTCATGGAC 13978 Query 61876 ATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 ||||| || ||||| |||||||| || || |||||||| Sbjct 13977 ATGATCTCCCTGGAAGGCAAGACCAACTTCTTCGAGAA 13940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397234474489760