Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq9046 583 3e-162 seq725 288 3e-73 seq19589 104 8e-18 >seq9046 Length=37467 Score = 583 bits (646), Expect = 3e-162 Identities = 559/715 (78%), Gaps = 6/715 (1%) Strand=Plus/Minus Query 53490 ACCGGCGGGTTACATCGATATTCGATGGGGGGCATGACCGCGCTAAGTTGCATGATCTCG 53549 |||||||| | || || ||||| ||||| |||||||| ||||| || ||||||||||| Sbjct 5590 ACCGGCGGCATCCACCGTTATTCAATGGGAGGCATGACGGCGCTGAGCTGCATGATCTCC 5531 Query 53550 ACCATCGTTGAAGGATTGCTCGGCGGCCTGGTACACAGCATCCTGATCCGTCGCGGGCGC 53609 ||||||| || ||||| | ||||||||| | |||||||| | ||| ||||| ||| Sbjct 5530 ACCATCGCCGAGGGATTATTAGGCGGCCTGATCCACAGCATTTTAATCAAACGCGGACGC 5471 Query 53610 ACTGATAAAGTCTTTAACCCCATTACCGCTGGTGCCGTCACGTTCGTCGCTGAAATGGTG 53669 | ||||| | ||||| || | || | || ||| || || ||||| ||||| || Sbjct 5470 ATCGATAAGTTATTTAATCCGCTGGTGGCCGCTGGCGTGACCTTTGTCGCCGAAATCCTG 5411 Query 53670 CAAATGCTGATCATCCTGGCGATCGCCCGACCTTATGAAGATGCGGTGCGTCTGGTGAGT 53729 |||||||||||||||||| ||| ||||| || | | ||||| | | |||||| || Sbjct 5410 CAAATGCTGATCATCCTGCTGATTGCCCGTCCGTTTACCGATGCACTCCATCTGGTCAGC 5351 Query 53730 AATATTGCTGCGCCAATGATGGTCACCAATACCGTCGGCGCGGCGCTGTTTATGCGTATA 53789 | ||||| ||||| |||||||| |||||||| |||| || || ||||||||||||| Sbjct 5350 AGCATTGCCGCGCCGATGATGGTGACCAATACGCTCGGTGCCGCCATGTTTATGCGTATT 5291 Query 53790 TTGCTCGATAAACGCGCGATGTTTGAAAAATACACTTCGGCTTTTTCTGCCACTGCGCTG 53849 |||| ||||| || |||||||| ||||||||||| ||||| ||||| || || |||||| Sbjct 5290 CTGCTGGATAAGCGGGCGATGTTCGAAAAATACACCTCGGCGTTTTCGGCAACAGCGCTG 5231 Query 53850 AAAGTGGCAGCCTCGACGGAAGGCATTTTGCGCCAGGGGTTTAACGAAGTGAACAGCATG 53909 ||||| || |||||||||||||| |||||||| | || |||||||||| |||||||||| Sbjct 5230 AAAGTCGCGGCCTCGACGGAAGGTATTTTGCGGCGCGGATTTAACGAAGAGAACAGCATG 5171 Query 53910 AAAGTGGCTCAGGTGCTGTATCTG---GAGCTGGATATTGGTGCAGTCGCGATTACCGAT 53966 |||||||| ||||||||| ||| |||||||||||||| || || ||||| ||||| Sbjct 5170 AAAGTGGCGCAGGTGCTG---CTGAAAGAGCTGGATATTGGCGCCGTGGCGATAACCGAC 5114 Query 53967 CGAGAGAAATTGCTGGCCTTTACCGGAATTGGTGACGACCACCATTTACCCGGCAAACCG 54026 || ||| |||||||||||||||||| || || |||||||| ||| | ||||||||| Sbjct 5113 CGCGAGCGATTGCTGGCCTTTACCGGCATCGGCGACGACCATCATCTGGTCGGCAAACCT 5054 Query 54027 ATTTCTTCAACTTATACTTTAAAAGCGATTGAAACCGGTGAAGTGGTCTACGCTGATGGC 54086 ||| |||| ||||| | || || || | || |||||||| ||||| |||||| Sbjct 5053 ATTGCTTCTGACTATACCTGGCGCGCCATCGAGAACGACGAAGTGGTGTACGCCGATGGC 4994 Query 54087 AACGAAGTACCTTATCGTTGCTCTTTGCATCCGCAATGCAAACTGGGGTCGACGCTGGTA 54146 ||||| | ||||| || || || ||||||| ||||||||||| ||||||||||| Sbjct 4993 AACGAGATGCCTTACCGCTGTTCGCTGCATCCCAGCTGCAAACTGGGCTCGACGCTGGTG 4934 Query 54147 ATTCCGTTGCGTGGTGAAAATCAGCGGGTGATGGGCACCATCAAATTGTATGAAG 54201 || ||| |||| || || |||||||||||||| ||||||||||||||||| |||| Sbjct 4933 ATCCCGCTGCGCGGCGAGAATCAGCGGGTGATCGGCACCATCAAATTGTACGAAG 4879 >seq725 Length=236385 Score = 288 bits (318), Expect = 3e-73 Identities = 553/814 (68%), Gaps = 16/814 (2%) Strand=Plus/Plus Query 13467 CGTCTGAGGAACGGAGAAGAGTCAGATACCCTGAAGACCGGAATCGAAGAGCTTGACGCT 13526 ||||| | ||||| || ||||| || || || || ||||| || ||||| |||| Sbjct 188784 CGTCTTAAAAACGGTGAGGAGTCGGACACGCTTAAAACCGGCATACCTGAGCTGGACGAA 188843 Query 13527 ATCACCGGAGGGATGAACGCAGAAGACCTGGTGATTATCGCCGCTCGTCCTGGTATGGGG 13586 || || || || ||||| || || ||| | || | || ||||| |||||||||||| Sbjct 188844 ATTACAGGCGGACTGAACAACGAGGATCTGATCATCGTAGCTGCTCGCCCTGGTATGGGG 188903 Query 13587 AAAACCGAACTGGCGCTGAAGATTGCCGAAGGTGTGGCAAGCCGCGTTATTCCTGGTTC- 13645 |||||||| | || |||| | || |||||||| || | ||||| || || Sbjct 188904 AAAACCGAGTTTGCTCTGACCGTGGCTGAAGGTGTTGCGGAAAGTACTATTC--GGATCG 188961 Query 13646 ----TGACGTC---CGGCGCGGGGTATTGATTTTCTCAATGGAAATGAGCGCATTGCAGA 13698 ||| || | |||||| || |||||||| |||||||||||||| |||| Sbjct 188962 GCGATGAGGTGTTGCCGCGCGGCGTGCTGATTTTCAGCATGGAAATGAGCGCTCAGCAGG 189021 Query 13699 TTGCAGAGCGAAGCATTGCCAACGCCGGGAGGATGTCGGTTAGCGTACTGCGAAATCCTG 13758 | ||| || | || |||| | ||| |||| | ||||| || ||| Sbjct 189022 TCATAGAACGCCAGTTGGCTGGCGCCTCAAACATGCCGGTGTCTGCCCTGCGCAAACCTT 189081 Query 13759 CATCGATGGATGACGAGGGCTGGGCACGTGTTGCTAACGGCATGAGTCAGCTTGCAGATT 13818 || ||| | || || | ||||||||| | | | ||||| | | | | | Sbjct 189082 CACGTATGAACGATGAAGACTGGGCACGCATATCGATGGGCATTAAGCGTTTATCTGGCC 189141 Query 13819 TGGATGTATGGGTAGTCGATGCTTCGCGGTTATCGGTCGAAGAAATACGCTCAATCGCAG 13878 || | || ||||| |||||||| ||| | | | || | || ||| | || || | Sbjct 189142 TGCAGGTGTGGGTTGTCGATGCGTCGAAACTGACCATTGAGCAGATCCGCGCGATTGCGG 189201 Query 13879 AACGGCATAAGCAGGAAAATCCAAACCTGTCACTCATCATGGCGGATTATCTTGGCCTGA 13938 || |||| || | | || | ||||| || || |||||| || ||||| |||||||||| Sbjct 189202 AAAGGCACAAACGGAAATACCCAAATCTATCTCTCATCCTGTGCGATTACCTTGGCCTGA 189261 Query 13939 TTGAGAAGCCGAAAGCAGACCGCAACGACCTCGCAATTGCTCACATCTCCGGAAGCCTGA 13998 | || |||||| || || || |||||||| || || || ||||||||||| || ||| Sbjct 189262 TCGAAAAGCCGCGTGCTGAACGAAACGACCTGGCGATCGCCCACATCTCCGGCGGCATGA 189321 Query 13999 AGGCGATGGCGAAAGACCTGAAAACACCGGTTATCTCCCTGAGTCAGCTTTCGCGCGATG 14058 | |||||||| |||||||| || || || || || || |||||||| || ||||| | Sbjct 189322 AACGCATGGCGAAGGACCTGAAGACGCCAGTGATGTCACTTAGTCAGCTGTCCCGCGACG 189381 Query 14059 TTGAGAAGCGACCAA------ACAAACGCCCGACAAACGCAGATTTGCGTGATTCAGGAA 14112 | ||||||||||||| | ||||| ||| ||| | || |||| || || | Sbjct 189382 TGGAGAAGCGACCAAAGGGCCAGAAACGGCCGGTTAACTCTGACCTGCGCGACGGGGGGA 189441 Query 14113 GCATTGAACAGGACGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATGATGAGA 14172 |||| || |||||||| ||| || ||||| || || |||| ||| ||||| Sbjct 189442 GCATCGAGCAGGACGCCGACGGGATTTATATGCTGTACCGCGAAGGGGTGTATGAACCCG 189501 Query 14173 ACAGTAGCGCCGCGCCATTTGCTGAAATCATCGTGACGAAAAACCGTTTTGGCTCGCTTG 14232 | || |||||||| || ||||||||||||||||| || ||||| ||||| ||| | Sbjct 189502 AAAGCCCTGCCGCGCCGTTCGCTGAAATCATCGTGACCAAGAACCGATTTGGTGAGCTCG 189561 Query 14233 GTACAGTTTACCAGCGGTTCTGTAACGGACACTT 14266 |||| |||||||||| |||| ||||| ||||| Sbjct 189562 GTACCGTTTACCAGCAGTTCAAAAACGGGCACTT 189595 >seq19589 Length=24186 Score = 104 bits (114), Expect = 8e-18 Identities = 222/331 (67%), Gaps = 3/331 (1%) Strand=Plus/Plus Query 15738 ACAAGGACTGCTGGCAAACGCCGCTCTGGCTTTTTGATGCGCTGGATATTGAGTTTGGAT 15797 |||| ||| ||||||| |||||| | | || |||||||||| |||||||||| | Sbjct 12366 ACAAAGACCGCTGGCAGACGCCGATGGAAGTATTCACTGCGCTGGATCTTGAGTTTGGTT 12425 Query 15798 TCTGGCTGGATTCAGCTGCGAGCGACAAAAACGCTCTGTGCGCTCACTGGCTAACTGAGG 15857 | | || || | |||| | || | ||||| || ||||| | | || || || | Sbjct 12426 TTTATCTTGACGCCGCTGA---CCACCAGAACGCGCTTTGCGCCCGGTACCTGACAGAAG 12482 Query 15858 CTGACGACGCGCTAAATTCTGAGTGGATAAGCCACGGTGCAATCTGGAATAACCCACCGT 15917 | || || ||||| | || ||| || |||| ||||||||| |||||| || | Sbjct 12483 CCGATGATGCGCTGGCCACCGAATGGGAGAGTTACGGCGCAATCTGGTGTAACCCGCCAT 12542 Query 15918 ACAGCAATATCAGGCCGTGGGTGGAAAAAGCCGCTGAGCAGTGCATACAACAGCGACAGA 15977 ||||| |||| ||||||||| || || ||||| ||||| ||| ||| ||| Sbjct 12543 ACAGCTCGATCACGCCGTGGGTTGAGAAGGCCGCCGAGCAATGCCGCGCCCAGTACCAGC 12602 Query 15978 CGGTAGTGATGCTTGTGCCAGAGGATATGTCTGTCGGATGGTTCAGCAAGGCTCTGGAGA 16037 |||| || ||||| |||| | |||| || || |||||| ||| ||| | Sbjct 12603 CGGTGGTAATGCTGCTGCCCGCCGATACCTCAACAGGCTGGTTCTCGCTGGCGCTGACTA 12662 Query 16038 GTGTTGACGAAGTTCGCATCATCACTGATGG 16068 | |||||| | ||| | ||||||||||| Sbjct 12663 CAGCCGACGAAATCCGCTTTATCACTGATGG 12693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175402108368264