Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq35 167 4e-36 seq6488 87.8 3e-12 >seq35 Length=455554 Score = 167 bits (184), Expect = 4e-36 Identities = 221/304 (73%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 196062 GTAACATGCATCAGTATCACGAACTCTTACAGCAGGTGCTCAGTATCGGCCACGACAAAG 196121 |||||||| | ||||||| || | | ||| | |||||| | ||| | |||| Sbjct 112123 GTAACATGAAACAGTATCTGGATTTAATGCAGAAAGTGCTCGATGAGGGCACCCCTAAAG 112182 Query 196122 CTGACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGC 196181 | ||||||||||| || ||||| ||| | | || |||||||| ||| | ||| Sbjct 112183 CCGACCGTACCGGTACGGGCACGTTGTCGATTTTTGGTCATCAGATGCGTTTCAACTTGC 112242 Query 196182 AAGACGGATTCCCGCTGGTCACCACGAAGAAACT-CCATCTGCGTTCCATCATTCATGAA 196240 | || || |||||||||||||| || || | || |||| | || ||||| ||||||||| Sbjct 112243 AGGAAGGTTTCCCGCTGGTCACGACCAA-ACGCTGCCATTTACGCTCCATTATTCATGAA 112301 Query 196241 CTGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCT 196300 || ||||||||||| || || || || ||||| || ||| ||| ||| |||| Sbjct 112302 CTCCTGTGGTTCCTGAAAGGCGAAACTAACATTGCTTATCTGCGTGAAAACAATGTCAGC 112361 Query 196301 ATCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGG 196360 |||||| |||||||||| ||||| ||| |||| || ||||||||||| ||||| ||| Sbjct 112362 ATCTGGGACGAGTGGGCTGACGAAAACGGCGACCTCGGACCGGTTTACGGCAAGCAATGG 112421 Query 196361 CGTG 196364 |||| Sbjct 112422 CGTG 112425 Score = 147 bits (162), Expect = 3e-30 Identities = 225/318 (71%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 196778 TTGTCTTGTCAGCTGTATCAGCG-TAGTGCGGATATGTTCCTCGGTGTACCGTTCAACAT 196836 ||||| || |||||||| ||||| | |||| |||| |||||||| | |||||||| || Sbjct 112602 TTGTCCTGCCAGCTGTACCAGCGCTCATGCG-ATATCTTCCTCGGCTTGCCGTTCAATAT 112660 Query 196837 CGCGTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGA 196896 ||| |||||| ||||| | || ||| |||||||||| || | | | ||| || Sbjct 112661 CGCCAGCTACGCACTGCTGGTGCATATGATGGCGCAACAATGCGACCTTGAAGTGGGTGA 112720 Query 196897 GTTCGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGA 196956 || || ||||| || || || ||| | ||| ||| |||||||||||| | Sbjct 112721 TTTTGTCTGGACGGGTGGCGATACGCACCTGTACAGCAACCACATGGAACAGACGCATCT 112780 Query 196957 ACAGCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAG 197016 || ||| ||| |||| |||||||| | || || || || |||||||||| | Sbjct 112781 GCAACTGAGCCGTGAACCCCGTGCGTTGCCAAAACTTGTCATTAAGCGCAAACCGGCCTC 112840 Query 197017 TATCTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGAT 197076 | || |||||||| |||||||| ||||| | | ||| ||||||||||| || || || Sbjct 112841 CTTGTTTGATTACAACTTCGAAGATTTCGAGATTGAAGGGTACGATCCGCACCCTGCAAT 112900 Query 197077 TAAAGCCCCGGTGGCTAT 197094 || || || || ||||| Sbjct 112901 CAAGGCACCTGTCGCTAT 112918 >seq6488 Length=277817 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| |||||||||||| ||||||||||||| | |||||||||||||| ||||| Sbjct 123577 GTAGTTCAGTTGGTTAGAATACCTGCCTGTCACGCAGGGGGTCGCGGGTTCGAGCCCCGT 123636 Query 3857 CAGTCCTGCCA 3867 | || | |||| Sbjct 123637 CCGTTCCGCCA 123647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770878545630480