Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq223 150 5e-32 seq25848 107 6e-19 >seq223 Length=511576 Score = 150 bits (166), Expect = 5e-32 Identities = 208/291 (71%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 33624 TTCTGTGGTGTATTTTTCAACTCCAGCATTATCAGTCCATTTTCTAGTGCGCAACTGACC 33683 ||| ||||||||||||||||| ||||| | ||| |||||||| | || ||| || Sbjct 459585 TTCGGTGGTGTATTTTTCAACGCCAGCCTGATCGGTCCATTTACGGGTTTGCAGTGCGCC 459644 Query 33684 TTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTGCC 33743 ||| | || || || || |||||| | || || || || || | ||| || | ||||| Sbjct 459645 TTCGATGTAGACCTGAGAACCTTTCTTCAGGTATTCGCCTGCGACTTCTGCTAATTTGCC 459704 Query 33744 AAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCATT 33803 || | || || ||||||||||| |||| || || | ||| || || || || ||| Sbjct 459705 GAACAACACCACACGGTGCCATTCCGTTTTTTCTTTCTGCTCGCCGGTGGCTTTGTCACG 459764 Query 33804 CCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCATTTGGCATGTATCG 33863 ||| || || || || | || | ||||||||| |||||||| || |||||||| || Sbjct 459765 CCAGCTCTCAGACGTTGCCAGAGTGATGTTGGCAACCGCGCCGCCGTTAGGCATGTAGCG 459824 Query 33864 CACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGATTACTTTATTTACGCC 33914 ||||| ||||| || || | | |||| || || ||||| |||||||| Sbjct 459825 GACTTCCGGGTCTTGTCCCAGATTACCGACGAGAATAACTTTGTTTACGCC 459875 >seq25848 Length=116905 Score = 107 bits (118), Expect = 6e-19 Identities = 184/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 33660 CCATTTTCTAGTGCGCAACTGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTC 33719 |||||| | || ||| ||| ||||| | || |||| || ||| || | || || || Sbjct 108246 CCATTTGCGGGTCTGCAGCTGGCCTTCGATGTAGACTTTTGCGCCCTTGGTCAGGTATTC 108187 Query 33720 ACCAGCAATTTCAGCGAGCTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTT 33779 ||| |||||||| || ||||| || || | || ||||||||||| || |||| || Sbjct 108186 ACCGGCAATTTCGGCCAGCTTTCCGAACACGACCACGCGGTGCCACTCGGTTTTTTCGCG 108127 Query 33780 TTTCTCACCAGTAGCCTTATCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAAC 33839 | ||| || || || || ||| ||| ||| || || || | | | | | || || Sbjct 108126 CTGCTCGCCGGTGGCTTTGTCACGCCAGTTTTCGGACGTGGCCAGCGTCAGGCTCGCCAC 108067 Query 33840 AGCGCCGCCATTTGGCATGTATCGCACTTCTGGGTCCTGGCCTAATGTGCCGAGGATGAT 33899 |||||||| || |||||||| |||| || || |||| ||||| | || | |||||| Sbjct 108066 CGCGCCGCCGTTCGGCATGTAGCGCAGCTCCGGTGCCTGACCTAAATTACCCACGATGAT 108007 Query 33900 TACTTTATTTACGCCGCGAGTTGCCAT 33926 ||||| || | || || |||||| Sbjct 108006 GACTTTGTTAATTCCACGTTCTGCCAT 107980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144854298689632