Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq10415 113 5e-23 seq3628 109 6e-22 seq284657 91.5 2e-16 seq691 82.4 8e-14 seq6792 78.8 9e-13 >seq10415 Length=18752 Score = 113 bits (124), Expect = 5e-23 Identities = 135/178 (76%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCA 68 || ||||||||||||||||||||| | ||||||||||| | || ||||| || Sbjct 12 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCGCAACGCCTGAATAATGGTGCA 71 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAAT 127 ||||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 72 TGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACACGAGGTAAT 129 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| || | ||| || |||||| | ||||| | | |||||||||||||||| Sbjct 130 GATTAAGAGGGACAGACGGGGGCATTCGTATTGCGACGCTAGAGGTGAAATTCTTGGA 187 >seq3628 Length=117492 Score = 109 bits (120), Expect = 6e-22 Identities = 134/178 (75%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCA 68 ||||||| | |||||||||||||| | ||||||||||| | ||| ||||| || Sbjct 116533 ACTTTTAATATGAAAAAATTAGAGTGCTCAAAGCAGGCGCAATGCCTGAATAATGGTGCA 116592 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAAT 127 ||||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 116593 TGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTGGGTTT-TCGGAACACGAGGTAAT 116650 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| || | ||| || |||||| | ||| | || | |||||| ||||||||| Sbjct 116651 GATTAAGAGGGACAGACGGGGGCATTCGTACTGCGATGCTAGAGGTGATATTCTTGGA 116708 >seq284657 Length=261 Score = 91.5 bits (100), Expect = 2e-16 Identities = 83/102 (81%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCA 68 || ||||||||||||||||||||| | ||||||||||| | || ||||| || Sbjct 129 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCGCAACGCCTGAATAATGGTGCA 70 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||||||||| ||||||||| | |||||||||||||| ||||| Sbjct 69 TGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT 29 >seq691 Length=506383 Score = 82.4 bits (90), Expect = 8e-14 Identities = 81/102 (79%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCA 68 || ||||||||||||||||||||| | ||||||||||| | | ||||| || Sbjct 377972 ACGTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGCGCAACACCTGAATAATGGTGCA 378031 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||||||||| |||||||| | |||||||||||||| ||||| Sbjct 378032 TGGAATAATGGAATAGGATCT-CGGTTCTATTTTGTTGGTTT 378072 >seq6792 Length=43928 Score = 78.8 bits (86), Expect = 9e-13 Identities = 125/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 15 TACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTAC-CATGGA 72 |||| |||||||||||| || | ||||||||| | | ||||| || | |||||| Sbjct 19072 TACTATGAAAAAATTAGTGCTT--AAAGCAGGCACAAAGGCTGAATA-ATGATGCATGGA 19016 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 ||||| ||| ||||| | || ||||||||||| ||||| || || |||||||| | Sbjct 19015 ATAATGGAAAAGGACCT-CGCTTCTATTTTGTTGGTTTAAAGAACATGAGGTAATGATTA 18957 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | | ||| || | | || | |||| || |||||||||||||||||| Sbjct 18956 AGAAGGACAGACAGAGGCATTCTTATTGTGATGGTAAAGGTGAAATTCTTGGA 18904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510577506720