Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limulus_20polyphemus_20[refseq_20GCF_5F000517525.1_202014-01-03] 286,793 sequences; 1,828,271,751 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6658 127 2e-24 seq5418 114 1e-20 seq3845 102 6e-17 seq1632 93.3 3e-14 >seq6658 Length=47451 Score = 127 bits (140), Expect = 2e-24 Identities = 159/215 (74%), Gaps = 5/215 (2%) Strand=Plus/Minus Query 61616 AGGGCATGCATTGTGATTTTGC-TGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCG 61674 |||| ||||| |||||||| ||| || || |||||| ||| | |||||| ||| Sbjct 24124 AGGGATTGCATGCAGATTTTGCATGTCTT-CTCTTCAAA---TATATCGTGAATAAGCCG 24069 Query 61675 TCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTG 61734 || ||||| ||||||| |||| | |||| || || | || || ||||| |||||| Sbjct 24068 TCAGAGGAACGTGTGGTCCAGATCATCGGTGACGCCGTGAAGATAGAGCAGGAGTTTCTG 24009 Query 61735 ACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATT 61794 || || || | || || | || || ||||||||||||| || ||| |||||||| Sbjct 24008 ACGGATGCCCTCCCAGTTGCCCTAATTGGCATGAATTGTGATCTTATGAAACAGTATATA 23949 Query 61795 GAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGG 61829 ||||||||||| ||||| |||||||| || ||||| Sbjct 23948 GAATTTGTTGCTGACCGACTGTTGGTGGAGTTGGG 23914 >seq5418 Length=65370 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 |||||||| || ||||| | || || ||| |||||| || ||||| ||| |||| Sbjct 7940 TTCAATGCAATTGAGACCTTGCCATGTGTAAAGAAGAAAGCAGACTGGGCTCTCACTTGG 7999 Query 61459 ATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGT 61518 || | | | | || || ||||||||||| ||| | |||| ||||| | || || || Sbjct 8000 ATTAGCCATCCTACAGCAACATTTGGTGAGCGAGTTGTGGCTTTTGCTGCTGTAGAAGGA 8059 Query 61519 GTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCC 61578 |||||||| ||| || ||||| |||| || ||| | || || ||||| || ||||| Sbjct 8060 ATATTTTTCTCTGGGTCTTTTGCTTCAATTTTCTGGCTAAAAAAGCGTGGCCTGATGCCT 8119 Query 61579 GGTCTGACCTTCAGCAATGAGTTGAT 61604 ||||| || || || |||||| |||| Sbjct 8120 GGTCTCACTTTTAGTAATGAGCTGAT 8145 >seq3845 Length=110360 Score = 102 bits (112), Expect = 6e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 61026 TGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGA 61085 ||| ||| | |||| ||| |||||||| | || || | || ||||| || || || Sbjct 70810 TGAGCCCTTGTTGCGAGAAAATCCTCGGAGATTTGTTATTTTTCCCATTGAATACCCAGA 70869 Query 61086 TATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT 61145 || |||| ||||| || || || || ||||| |||||||| || || || || ||| | Sbjct 70870 CATCTGGCAGATGTATAAGAAAGCAGAGGCTTCATTCTGGACTGTAGAAGAAGTTGATCT 70929 Query 61146 GTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACA 61205 |||||||||| ||| | |||||| |||| | ||||||||| || ||| || Sbjct 70930 GTCCAAAGACCTGATACAGTGGGAGAATTTAAAAGAAGATGAACAACACTTTATTTCTCA 70989 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT 61251 | |||| |||||||| ||| || || || || ||||| ||| Sbjct 70990 CATCCTGGCTTTCTTTGCTGCTAGTGATGGGATTGTTAATGAAAAT 71035 >seq1632 Length=265768 Score = 93.3 bits (102), Expect = 3e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 67067 TTGTGCATGTTGGAGATGGCGATACGGGCGGCCAGGACACCATAATCGGGATGTAGAGTC 67126 ||||| | |||||||| || || || || || |||| | ||||||| |||||| ||| Sbjct 50462 TTGTGTAAGTTGGAGACAGCAATGCGAGCAGCAAGGAGAGCATAATCTGGATGTTTAGTT 50521 Query 67127 ATCATACTGGCGGCAGTTTCAGCGGCCAAGGTATCAAGTTCAGCGGTAGTCACACCAGGA 67186 |||| | || |||||||| || || ||| | ||||||||| | || || ||||||||| Sbjct 50522 GTCATGGTTGCAGCAGTTTCTGCTGCTAAGTTGTCAAGTTCAACTGTCGTTACACCAGGA 50581 Query 67187 TACAGGCCA 67195 || | |||| Sbjct 50582 TATAAGCCA 50590 Score = 87.8 bits (96), Expect = 1e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66296 TGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGT 66355 || |||||||| | ||||| ||||| | |||||| ||| |||||| || || ||| Sbjct 30761 TGGGGACACATTAAAGACCACATTCCATCATTTTCTACTCGAGACATAAACAGGTCTGGT 30820 Query 66356 ATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGC 66415 ||||| | || || || | || || ||||| || ||||| | || |||||| | Sbjct 30821 ATCCACAAAGCATAAAACAAGTCACGAGCTCGATGTTCCTCCTTACCAGTATTTTTTTTC 30880 Query 66416 AAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGA 66461 | || || || ||||| || || |||||||||||||||| |||| Sbjct 30881 AGATCCAGAAATTCAAAAATATCTGCATGCCATGGTTCCAAATAGA 30926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396178384669520